Information on SUBCLASS 5.33.1 |
Subclass Accession number: 5812
Subclass: 5.33.1 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 19.4 +/- 17.3 Average RMSD (Å) : 0.720 +/- 0.217 Consensus geometry
|
Consensus Sequence: | XpGhXhchh |
(φψ)-conformation: | aagpppabb |
Pattern: | x | [apqt] | [flv] | [avy] | [aert] | [aqs] | [IMV] | x | [ANQS] | [G] | [ai] | [epr] | [APY] | [ADN] | [LTV] | [FV] | [FGILT] |
Conservation: | -0.713 | -0.436 | -0.412 | -0.652 | -0.728 | -0.097 | 1.073 | -0.755 | 0.089 | 3.224 | -0.311 | -0.647 | -0.170 | 0.577 | 0.317 | 0.529 | -0.887 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1amf_*_39 | 1amf | - | 40 | 56 | STLARQIEAGAPADLFI | HHHHHHHHHT---SEEE | aaaaaaaaagxxxabbb |
1atg_*_37 | 1atg | - | 38 | 54 | GPVYAQIVNGAPYNVFF | HHHHHHHHTT---SEEE | aaaaaaaaavpxbabbb |
1j1n_A_54 | 1j1n | A | 56 | 72 | EQFNLMMASGDLPDVVG | HHHHHHHTSS---SEEE | aaaaaaaaavbxxabbb |
1sbp_*_45 | 1sbp | - | 46 | 62 | GKQATSVINGIEADTVT | HHHHHHHHTT---SEEE | aaaaaaaaagxxxabbb |
1v9c_A_141 | 1v9c | A | 141 | 157 | LALVEAIRQGARPALVL | HHHHHHHHTT---SEEE | aaaaaaaaagpbxabbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1amf_*_39 | 1amf | * | MOOMOLYBDATE ION | S - 39 |
1amf_*_39 | 1amf | * | MOOMOLYBDATE ION | S - 40 |
1atg_*_37 | 1atg | * | WO4TUNGSTATE(VI)ION | S - 37 |
1atg_*_37 | 1atg | * | WO4TUNGSTATE(VI)ION | G - 38 |
1atg_*_37 | 1atg | * | EDO1,2-ETHANEDIOL | V - 40 |
1atg_*_37 | 1atg | * | EDO1,2-ETHANEDIOL | Q - 43 |
1atg_*_37 | 1atg | * | EDO1,2-ETHANEDIOL | Y - 50 |
1j1n_A_54 | 1j1n | A | MAVD-MANNURONIC ACID | S - 54 |
1j1n_A_54 | 1j1n | A | MAVD-MANNURONIC ACID | Q - 55 |
PDB Site Annotated loops in this subclass |
Clusters included in this Subclass |
CLUSTER: HE.6.175 |
CLUSTER: HE.7.143 |