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Information on SUBCLASS 5.33.1
Subclass Accession number: 5812
Subclass: 5.33.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 19.4 +/- 17.3
Average RMSD (Å) : 0.720 +/- 0.217

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: XpGhXhchh
(φψ)-conformation: aagpppabb
Pattern: x[apqt][flv][avy][aert][aqs][IMV]x[ANQS][G][ai][epr][APY][ADN][LTV][FV][FGILT]
Conservation:-0.713-0.436-0.412-0.652-0.728-0.0971.073-0.7550.0893.224-0.311-0.647-0.1700.5770.3170.529-0.887
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1amf_*_391amf   -4056STLARQIEAGAPADLFIHHHHHHHHHT---SEEEaaaaaaaaagxxxabbb
1atg_*_371atg   -3854GPVYAQIVNGAPYNVFFHHHHHHHHTT---SEEEaaaaaaaaavpxbabbb
1j1n_A_541j1n   A5672EQFNLMMASGDLPDVVGHHHHHHHTSS---SEEEaaaaaaaaavbxxabbb
1sbp_*_451sbp   -4662GKQATSVINGIEADTVTHHHHHHHHTT---SEEEaaaaaaaaagxxxabbb
1v9c_A_1411v9c   A141157LALVEAIRQGARPALVLHHHHHHHHTT---SEEEaaaaaaaaagpbxabbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1amf_*_391amf   *     MOOMOLYBDATE ION S - 39
1amf_*_391amf   *     MOOMOLYBDATE ION S - 40
1atg_*_371atg   *     WO4TUNGSTATE(VI)ION S - 37
1atg_*_371atg   *     WO4TUNGSTATE(VI)ION G - 38
1atg_*_371atg   *     EDO1,2-ETHANEDIOL V - 40
1atg_*_371atg   *     EDO1,2-ETHANEDIOL Q - 43
1atg_*_371atg   *     EDO1,2-ETHANEDIOL Y - 50
1j1n_A_541j1n   A     MAVD-MANNURONIC ACID S - 54
1j1n_A_541j1n   A     MAVD-MANNURONIC ACID Q - 55
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1amf_*_391amf   * MO4MOLYBDATE BINDING SITE.S - 39
1atg_*_371atg   * MOBANION-BINDING POCKET LOCATED AT THE INTERFACE BETWEEN THE 2 DOMAINS OF THE PROTEIN. BINDS BOTH MOLYBDATE AND TUNGSTATE.S - 37

Clusters included in this Subclass
CLUSTER: HE.6.175
CLUSTER: HE.7.143