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Information on SUBCLASS 5.40.1
Subclass Accession number: 5819
Subclass: 5.40.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 28.9 +/- 35.3
Average RMSD (Å) : 0.825 +/- 0.330

Consensus geometry
d (Å): 19 delta (°): 90-135 theta (°): 90-135 rho (°): 45-90
Consensus Sequence: XXXhXXXpX
(φψ)-conformation: aalppppbb
Pattern: xxxxxxxxxxxxxxx
Conservation:1.184-1.2412.326-0.983-0.2100.4340.388-0.2780.5510.821-0.339-1.112-1.370-0.081-0.092
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1e3m_A_5391e3m   A558572LAERAYTLNYTCPTFHHHHHHHTT-B--EEaaaaaaaavbbxxbb
1e3m_B_5391e3m   B558572LAERAYTLNYTCPTFHHHHHHHHT-B--EEaaaaaaaavxbxxbb
1f9y_A_1431f9y   A143157LRQILHTRAFDKLNKHHHHHHHH-----EEaaaaaaaalxpxxxx
1gs5_A_451gs5   A4862VDELMKGLNLPVKKKHHHHHHHHT----EEaaaaaaaavbxbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e3m_A_5391e3m   A     MSESELENOMETHIONINE A - 541
1e3m_A_5391e3m   A     MSESELENOMETHIONINE L - 542
1e3m_A_5391e3m   A     MSESELENOMETHIONINE Q - 544
1e3m_A_5391e3m   A     MSESELENOMETHIONINE S - 545
1e3m_A_5391e3m   A     MSESELENOMETHIONINE A - 546
1e3m_A_5391e3m   A     MSESELENOMETHIONINE S - 547
1e3m_A_5391e3m   A     MSESELENOMETHIONINE A - 548
1e3m_A_5391e3m   A     MSESELENOMETHIONINE L - 549
1e3m_A_5391e3m   A     MSESELENOMETHIONINE A - 550
1e3m_A_5391e3m   A     MSESELENOMETHIONINE E - 551
1e3m_A_5391e3m   A     MSESELENOMETHIONINE L - 552
1e3m_A_5391e3m   A     MSESELENOMETHIONINE D - 553
1e3m_A_5391e3m   A     MSESELENOMETHIONINE V - 554
1e3m_A_5391e3m   A     MSESELENOMETHIONINE Y - 567
1e3m_A_5391e3m   A     MSESELENOMETHIONINE P - 570
1f9y_A_1431f9y   A     ACTACETATE ION K - 154
1gs5_A_451gs5   A     NLGN-ACETYL-L-GLUTAMATE G - 45
1gs5_A_451gs5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER G - 45
1gs5_A_451gs5   A     NLGN-ACETYL-L-GLUTAMATE C - 46
1gs5_A_451gs5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER C - 46
1gs5_A_451gs5   A     NLGN-ACETYL-L-GLUTAMATE V - 48
1gs5_A_451gs5   A     NLGN-ACETYL-L-GLUTAMATE D - 49
1gs5_A_451gs5   A     NLGN-ACETYL-L-GLUTAMATE K - 61
1gs5_A_451gs5   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER K - 61
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gs5_A_451gs5   A ANPANP BINDING SITE FOR CHAIN AG - 45

Clusters included in this Subclass
CLUSTER: HE.6.188