Information on SUBCLASS 5.6.4 |
Subclass Accession number: 5763
Subclass: 5.6.4 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation EC : 3.1 (>75 %) 3.1.6 (>75 %) GO : GO:0004065 (>50 %) GO:0005509 (>50 %) GO:0008484 (>75 %) GO:0016788 (>75 %) SCOP : 53648 (>75 %) 53649 (>75 %) 53653 (>75 %) |
Number of loops: 5 Average sequence ID (%) : 23.5 +/- 27.6 Average RMSD (Å) : 1.040 +/- 0.522 Consensus geometry
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Consensus Sequence: | XXXPpXXhX |
(φψ)-conformation: | aabaappbb |
Pattern: | [ALW] | [AFLY] | [EKP] | [ael] | x | [CER] | [hkm] | x | [CHNQ] | [P] | [DENS] | [LT] | [EPR] | [IV] | x | [FLVY] | x |
Conservation: | -0.459 | -0.331 | 0.204 | -0.684 | -0.472 | -0.333 | -0.630 | -0.234 | -0.444 | 3.328 | 0.358 | 0.190 | -0.022 | 1.228 | -0.958 | -0.023 | -0.719 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ds6_A_97 | 1ds6 | A | 97 | 113 | WFPEVRHHCPSTPIILV | HHHHHHHH-TTS-EEEE | aaaaaaaabaaxpbbxb |
1ga8_A_12 | 1ga8 | A | 18 | 34 | AAKSVEAAHPDTEIRFH | HHHHHHHH-TTS---EE | aaaaaaaabaabxbbxb |
1lr7_A_113 | 1lr7 | A | 116 | 132 | LLKARCKEQPELEVQYQ | HHHHHHHT-TT--EEEE | aaaaaaaabaaxbxabx |
1ryh_A_116 | 1ryh | A | 116 | 132 | WYPEVRHHCPNTPIILV | HHHHHHHH-SSS-EEEE | aaaaaaaabaaxpbbxb |
2ay1_A_107 | 2ay1 | A | 115 | 131 | ALELARMANPDLRVFVS | HHHHHHHH-TT--EEEE | aaaaaaaabaaxbbbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ds6_A_97 | 1ds6 | A | GDPGUANOSINE-5'-DIPHOSPHATE | T - 115 |
1ga8_A_12 | 1ga8 | A | MSESELENOMETHIONINE | V - 22 |
1ga8_A_12 | 1ga8 | A | MSESELENOMETHIONINE | H - 26 |
1ga8_A_12 | 1ga8 | A | MSESELENOMETHIONINE | T - 29 |
1ga8_A_12 | 1ga8 | A | MSESELENOMETHIONINE | E - 30 |
1ga8_A_12 | 1ga8 | A | MSESELENOMETHIONINE | I - 31 |
1ga8_A_12 | 1ga8 | A | MSESELENOMETHIONINE | R - 32 |
1ga8_A_12 | 1ga8 | A | MSESELENOMETHIONINE | F - 33 |
1ga8_A_12 | 1ga8 | A | MSESELENOMETHIONINE | H - 34 |
2ay1_A_107 | 2ay1 | A | PLPPYRIDOXAL-5'-PHOSPHATE | G - 107 |
2ay1_A_107 | 2ay1 | A | PLPPYRIDOXAL-5'-PHOSPHATE | G - 108 |
2ay1_A_107 | 2ay1 | A | PLPPYRIDOXAL-5'-PHOSPHATE | T - 109 |
2ay1_A_107 | 2ay1 | A | PLPPYRIDOXAL-5'-PHOSPHATE | G - 110 |
2ay1_A_107 | 2ay1 | A | PLPPYRIDOXAL-5'-PHOSPHATE | L - 112 |
Clusters included in this Subclass |
CLUSTER: HE.6.95 |