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Information on SUBCLASS 5.8.3
Subclass Accession number: 5769
Subclass: 5.8.3 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 14.9 +/- 14.3
Average RMSD (Å) : 0.875 +/- 0.189

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XphpXGphh
(φψ)-conformation: aapbpgpbb
Pattern: x[DQRS]x[AMVY][ADKR]x[AILT][AL][PRS][DRTY][ILV][KQSY][EP][G][ADQT][LMY][ILV][AFIL]x
Conservation:-0.838-0.293-0.717-0.475-0.565-0.565-0.4290.452-0.003-0.9740.886-0.4290.7783.342-0.5650.3280.959-0.384-0.506
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bg6_*_881bg6   -89107ASIAANIASYISEGQLIILHHHHHHHGGG--TT-EEEEaaaaaaaaaaxbpgxbbbx
1h2b_A_1691h2b   A174192YRAVKKAARTLYPGAYVAIHHHHHHHHTT--TT-EEEEaaaaaaaaaaxbxgxbbxb
1qgu_A_3821qgu   A382400NDDYDRTLPDLKEGTLLFDHHHHHHHGGG--TT-EEEEaaaaaaaaaabxpvxxbbb
2uag_A_3902uag   A391409EQAMRLLAPRVQPGDMVLLHHHHHHHGGG--TT-EEEEaaaaaaaaaaxbpgxbbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1h2b_A_1691h2b   A     NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) A - 169
1h2b_A_1691h2b   A     ZNZINC ION A - 169
1h2b_A_1691h2b   A     OCAOCTANOIC ACID (CAPRYLIC ACID) T - 172
1h2b_A_1691h2b   A     NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) T - 172
1h2b_A_1691h2b   A     NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) V - 193

Clusters included in this Subclass
CLUSTER: HE.7.193
CLUSTER: HE.9.45