ArchDB - Biological DataBase of Protein Loops

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Information on SUBCLASS 5.9.1

Subclass Accession number: 5770
Subclass: 5.9.1

PSSM

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 14

Average sequence ID (%) : 16.7 +/- 16.2
Average RMSD (Å) : 0.800 +/- 0.263

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 135-180

rho (°): 225-270

Consensus Sequence:	XXXPphpXh
(φψ)-conformation:	aabaapabb

Pattern:	x	[adeknrs]	x	[ily]	x	[AEKQRST]	x	[DKP]	[deknqst]	[AIKLTV]	[ADEGKNQRS]	x	[AILVW]
Conservation:	-0.982	-0.674	-0.460	0.454	-0.829	0.109	-0.766	2.748	-0.054	0.447	0.053	-0.771	0.725

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a9n_A_131	1a9n	A	133	145	LYVIYKVPQVRVL	HHHHHH-TT-SEE	aaaaaabaaxabb
1drk_*_166	1drk	-	174	186	QNLLTAHPDVQAV	HHHHHH-TT--EE	aaaaaabaapabb
1e4c_P_74	1e4c	P	78	90	MAAYQSRPDANAV	HHHHHH-TT--EE	aaaaaabaaxabb
1gud_A_177	1gud	A	185	197	TNVLQRNPNIKAI	HHHHHH-TT--EE	aaaaaabaapabb
1jx6_A_241	1jx6	A	249	261	KASLAKHPDVDFI	HHHHHH----SEE	aaaaaabaababb
1k0w_A_77	1k0w	A	81	93	RLLYQAFPSIGGI	HHHHHH-TT--EE	aaaaaabaaxabb
1m32_A_119	1m32	A	123	135	DAILNADPTISHI	HHHHHH-TT--EE	aaaaaabaaxabb
1o50_A_23	1o50	A	27	39	VDRILEDPVTRTV	HHHHHHSTT--EE	aaaaaabaaxabx
1qg8_A_106	1qg8	A	111	123	VRELDTHPEKAVI	HHHHHH-TT--EE	aaaaaabaaxabb
2bnh_*_100	2bnh	-	101	113	PSTLRSLPTLREL	HHHHHH-TT--EE	aaaaaabaaxabb
2gsa_A_98	2gsa	A	105	117	EMVNDAVPSIEMV	HHHHHHSTT-SEE	aaaaaaxaaxabb
2nac_A_105	2nac	A	105	117	PERIAKAKNLKLA	HHHHHH-TT--EE	aaaaaaxaaxabb
2scu_B_295	2scu	B	302	314	FKIILSDDKVKAV	HHHHHHSSS--EE	aaaaaaxaaxabb
8abp_*_179	8abp	-	187	199	NSMLVQHPEVKHW	HHHHTT-TT-SEE	aaaaaabaaxabb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1e4c_P_74	1e4c	P	ZNZINC ION	F - 76
1e4c_P_74	1e4c	P	ZNZINC ION	H - 92
1e4c_P_74	1e4c	P	ZNZINC ION	N - 93
1gud_A_177	1gud	A	ZNZINC ION	D - 182
1gud_A_177	1gud	A	ZNZINC ION	N - 186
1k0w_A_77	1k0w	A	ZNZINC ION	H - 95
1m32_A_119	1m32	A	MSESELENOMETHIONINE	I - 122
1m32_A_119	1m32	A	MSESELENOMETHIONINE	I - 135

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1e4c_P_74	1e4c	P	ACTACTIVE CENTER DEFINDED BY THE ZINC ION AND THE FOUR ZINC COORDINATING RESIDUES	H - 92
1gud_A_177	1gud	A	ZN1ZN BINDING SITE FOR CHAIN A	D - 182

Clusters included in this Subclass

CLUSTER: HE.4.127

CLUSTER: HE.5.118

CLUSTER: HE.5.337

CLUSTER: HE.6.124

CLUSTER: HE.6.69