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Information on SUBCLASS 6.4.1
Subclass Accession number: 5864
Subclass: 6.4.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 25

Average sequence ID (%) : 22.0 +/- 19.6
Average RMSD (Å) : 0.760 +/- 0.277

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 90-135 rho (°): 180-225
Consensus Sequence: XhchXXGXXh
(φψ)-conformation: aalpbpgpbb
Pattern: x[acgilmptv]xx[AFGLMTV][ADGKNQ][AILPV][adegkqrt][ekpqrt][dgn][adekqst]x[CILPV][aikltv]
Conservation:-1.008-0.449-0.529-1.037-0.1420.4280.927-0.503-0.2162.384-0.231-0.9131.557-0.267
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a62_*_831a62   -8598QIRRFNLRTGDTISHHHHTT--TT-EEEaaaaalxbpvxxbb
1b9m_A_1641b9m   A166179SGARLGLDEGKEVLHHHHTT-STT-EEEaaaaavxbpvpxbb
1bkj_A_1361bkj   A139152VDELLGLPENSAVLHHHHTT--TTEEEEaaaaavxxxvbbxa
1d1t_A_1751d1t   A183196AVKTGKVKPGSTCVHHTTS---TT-EEEaaaaalpxxvxbbb
1dl5_A_611dl5   A6780FMEWVGLDKGMRVLHHHHTT--TT-EEEaaaaavpbpvxbbb
1dzf_A_1831dzf   A184197VALYLGLKRGEVVKHHHHHT--TT-EEEaaaaavxbpgxbbx
1e3j_A_1511e3j   A160173ACRRAGVQLGTTVLHHHHHT--TT-EEEaaaaavxbpvxbbb
1f5v_A_1361f5v   A139152VTKLLKLPQHVLPLHHHHTT--TTEEEEaaaaalxxxvbbwa
1fx7_A_1781fx7   A183196RLKDAGVVPNARVTHHHHTT--TT-EEEaaaaavxbpvxxbb
1g3s_A_1791g3s   A181194QLLDADIRVGSEVEHHHHTT--TT-EEEaaaaavbbxgxxbb
1i9g_A_851i9g   A91104IVHEGDIFPGARVLHHHHTT--TT-EEEaaaaalxxpvxbbb
1ixk_A_1101ixk   A110123PPVALDPKPGEIVAHHHHH---TT-EEEaaaaalxbpvxxbb
1iz0_A_1081iz0   A117130ALKRAQARPGEKVLHHHHTT--TT-EEEaaaaalxbpvxxbx
1jg1_A_771jg1   A8396MLEIANLKPGMNILHHHHHT--TT--EEaaaaalxbpvxbbb
1jqb_A_11511jqb   A11581171GAELADIEMGSSVVHHHHTT--TT--EEaaaaalxbpvxxbb
1kol_A_1701kol   A177190GAVTAGVGPGSTVYHHHHTT--TT-EEEaaaaavxbpvxxbb
1l1e_A_451l1e   A5669ALGKLNLEPGMTLLHHHTTT--TT-EEEaaaaalxbpvxbbb
1llu_A_1551llu   A162175GLKQTNARPGQWVAHHHHHT--TT-EEEaaaaavxbpgxbbb
1o54_A_861o54   A92105IAMMLDVKEGDRIIHHHHTT--TT-EEEaaaaalxbpvxbbx
1o69_A_561o69   A6376ALRVAGVKQDDIVLHHHHTT--TT-EEEaaaaavxbpvxxbx
1opd_*_471opd   -4962KLQTLGLTQGTVVTHHHHT---TT-EEEaaaaalxxpvxxbb
1pch_*_471pch   -4962NVMAMAIKTGTEITHHHHH---TT-EEEaaaaalxbpvxxbb
1ptf_*_471ptf   -4962GVMSLGVGQGSDVTHHHHH---TT-EEEaaaaavxbpvxxbb
1rjw_A_1491rjw   A156169ALKVTGAKPGEWVAHHHHHT--TT-EEEaaaaavxbpgxbbb
1sph_A_471sph   A4962GVMSLGIAKGAEITHHHHH---TT-EEEaaaaalxbpvxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bkj_A_1361bkj   A     FMNFLAVIN MONONUCLEOTIDE F - 153
1d1t_A_1751d1t   A     ZNZINC ION G - 175
1d1t_A_1751d1t   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 175
1d1t_A_1751d1t   A     ZNZINC ION T - 178
1d1t_A_1751d1t   A     ACTACETATE ION T - 178
1d1t_A_1751d1t   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 178
1d1t_A_1751d1t   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE F - 198
1dl5_A_611dl5   A     SAHS-ADENOSYL-L-HOMOCYSTEINE M - 64
1dl5_A_611dl5   A     SAHS-ADENOSYL-L-HOMOCYSTEINE E - 81
1dl5_A_611dl5   A     SAHS-ADENOSYL-L-HOMOCYSTEINE I - 82
1e3j_A_1511e3j   A     ZNZINC ION E - 152
1i9g_A_851i9g   A     SAMS-ADENOSYLMETHIONINE E - 105
1i9g_A_851i9g   A     SAMS-ADENOSYLMETHIONINE A - 106
1ixk_A_1101ixk   A     MSESELENOMETHIONINE P - 110
1ixk_A_1101ixk   A     MSESELENOMETHIONINE P - 111
1ixk_A_1101ixk   A     MSESELENOMETHIONINE V - 112
1ixk_A_1101ixk   A     MSESELENOMETHIONINE A - 113
1ixk_A_1101ixk   A     MSESELENOMETHIONINE P - 116
1ixk_A_1101ixk   A     MSESELENOMETHIONINE K - 117
1ixk_A_1101ixk   A     MSESELENOMETHIONINE P - 118
1ixk_A_1101ixk   A     MSESELENOMETHIONINE G - 119
1ixk_A_1101ixk   A     MSESELENOMETHIONINE E - 120
1ixk_A_1101ixk   A     MSESELENOMETHIONINE I - 121
1ixk_A_1101ixk   A     MSESELENOMETHIONINE V - 122
1ixk_A_1101ixk   A     MSESELENOMETHIONINE A - 123
1iz0_A_1081iz0   A     MSESELENOMETHIONINE V - 109
1iz0_A_1081iz0   A     MSESELENOMETHIONINE A - 114
1iz0_A_1081iz0   A     MSESELENOMETHIONINE Y - 115
1iz0_A_1081iz0   A     MSESELENOMETHIONINE L - 118
1iz0_A_1081iz0   A     MSESELENOMETHIONINE K - 119
1iz0_A_1081iz0   A     MSESELENOMETHIONINE R - 124
1iz0_A_1081iz0   A     MSESELENOMETHIONINE P - 125
1iz0_A_1081iz0   A     MSESELENOMETHIONINE G - 126
1jg1_A_771jg1   A     SAHS-ADENOSYL-L-HOMOCYSTEINE V - 80
1jg1_A_771jg1   A     SAHS-ADENOSYL-L-HOMOCYSTEINE E - 97
1jg1_A_771jg1   A     SAHS-ADENOSYL-L-HOMOCYSTEINE V - 98
1jqb_A_11511jqb   A     ZNZINC ION M - 1151
1kol_A_1701kol   A     ZNZINC ION I - 170
1kol_A_1701kol   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 170
1kol_A_1701kol   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 173
1kol_A_1701kol   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE H - 176
1kol_A_1701kol   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE Y - 190
1kol_A_1701kol   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 192
1l1e_A_451l1e   A     CO3CARBONATE ION K - 52
1l1e_A_451l1e   A     SAHS-ADENOSYL-L-HOMOCYSTEINE K - 52
1l1e_A_451l1e   A     SAHS-ADENOSYL-L-HOMOCYSTEINE D - 70
1l1e_A_451l1e   A     SAHS-ADENOSYL-L-HOMOCYSTEINE I - 71
1llu_A_1551llu   A     ZNZINC ION A - 155
1llu_A_1551llu   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 155
1llu_A_1551llu   A     ZNZINC ION T - 158
1llu_A_1551llu   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 158
1llu_A_1551llu   A     EDO1,2-ETHANEDIOL T - 158
1llu_A_1551llu   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE S - 177
1o69_A_561o69   A     X04(2-AMINO-4-FORMYL-5-HYDROXY-6-METHYLPYRIDIN-3-YL) METHYL DIHYDROGEN PHOSPHATE A - 56
1o69_A_561o69   A     X04(2-AMINO-4-FORMYL-5-HYDROXY-6-METHYLPYRIDIN-3-YL) METHYL DIHYDROGEN PHOSPHATE T - 57
1o69_A_561o69   A     X04(2-AMINO-4-FORMYL-5-HYDROXY-6-METHYLPYRIDIN-3-YL) METHYL DIHYDROGEN PHOSPHATE A - 58
1o69_A_561o69   A     X04(2-AMINO-4-FORMYL-5-HYDROXY-6-METHYLPYRIDIN-3-YL) METHYL DIHYDROGEN PHOSPHATE L - 60
1rjw_A_1491rjw   A     ZNZINC ION A - 149
1rjw_A_1491rjw   A     ETFTRIFLUOROETHANOL T - 152
1rjw_A_1491rjw   A     ETFTRIFLUOROETHANOL I - 170
1rjw_A_1491rjw   A     ETFTRIFLUOROETHANOL Y - 171

Clusters included in this Subclass
CLUSTER: HE.5.217
CLUSTER: HE.5.218
CLUSTER: HE.6.19
CLUSTER: HE.6.79
CLUSTER: HE.7.155
CLUSTER: HE.7.6
CLUSTER: HE.8.7