ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 7.8.1

Subclass Accession number: 446
Subclass: 7.8.1

Type: HE alpha-beta
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 3.1 (>75 %)  3.1 (>75 %)  3.1.1 (>75 %)  3.1.1 (>75 %)  3.1.1.3 3.1.1.3 (>75 %)
GO : GO:0016298 (>50 %)  GO:0016298 (>75 %)  GO:0016788 (>75 %)  GO:0016788 (>75 %)  GO:0016789 (>75 %)  GO:0016789 (>75 %)
SCOP : 53473 (>75 %)  53473 (>75 %)  53474 (>75 %)  53474 (>75 %)  53558 (>50 %)  53558 (>75 %)

Number of loops: 3

Average sequence ID (%) : 12.0 +/- 13.5
Average RMSD (Å) : 1.533 +/- 0.153

Consensus geometry

d (Å): 17

delta (°): 135-180

theta (°): 90-135

rho (°): 0-45

Consensus Sequence:	XXXpphXpXXX
(φψ)-conformation:	aalpppappbb

Pattern:	[NPS]	x	[NV]	[CKT]	[GIL]	x	[IK]	x	[ALM]	x	[EK]	[EGQ]	[ALT]	[GQ]	[KY]	[ES]	[ILV]	[DGR]	[EKS]	[DGV]	[FR]	x	[IL]	x	x
Conservation:	0.003	-0.880	-0.441	-0.502	-1.385	-0.123	-0.181	0.330	0.003	-1.006	1.996	-0.123	-0.502	0.889	1.365	1.308	1.390	-0.754	0.381	-1.385	0.516	-0.628	1.868	-0.880	-1.259

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1e4f_T_53	1e4f	T	59	83	SVNTLLKELEEQLQKSLRSDFVISF	HHHHHHHHHHHHHTS---S-EEEEE	aaaaaaaaaaaaalbxbaxxxbbbb
1pie_A_101	1pie	A	102	126	NYVKGMIVMLKGAGYEIDKGFELLI	HHHHHHHHHHHHTT----S-EEEEE	aaaaaaaaaaaaavxbxabxbbbbb
1viu_A_93	1viu	A	93	117	PEVCIRKEAIEETGYEVGEVRKLFE	HHHHHHHHHHHHHS------EEEEE	aaaaaaaaaaaaavxxxFxbbxaeb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1viu_A_93	1viu	A	MSESELENOMETHIONINE	L - 118

Clusters included in this Subclass