Information on SUBCLASS 8.4.1 |
Subclass Accession number: 5968
Subclass: 8.4.1 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 6 Average sequence ID (%) : 15.5 +/- 15.0 Average RMSD (Å) : 1.417 +/- 0.445 Consensus geometry
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Consensus Sequence: | XhchphpXXhXh |
(φψ)-conformation: | aalpbbabppbb |
Pattern: | [EKNRSY] | [acvy] | [ltv] | [ACKT] | [agklv] | [ILM] | [AIK] | [eknq] | [klmt] | [EL] | [DEKT] | [gkqs] | [AILMY] | [GNQ] | [fimvy] | [DEKQS] | [FILMP] | [DKPRT] | [AGKRST] | [ADGKT] | [FP] | x | [IKL] | x | [FIKV] |
Conservation: | -0.487 | -0.561 | -0.157 | -0.117 | -1.649 | 2.557 | -0.702 | 0.022 | -0.804 | 1.352 | 0.776 | -0.866 | 0.093 | 1.981 | -0.526 | 1.077 | -0.189 | -0.323 | -0.603 | -0.779 | 0.544 | -0.208 | 0.941 | -1.455 | 0.083 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ais_A_73 | 1ais | A | 78 | 102 | RAVAKLAQKLKSIGVKFKRAPQIDV | HHHHHHHHHHHHTT---SSS-EEEE | aaaaaaaaaaaaagxbbabxpxbbx |
1e4f_T_53 | 1e4f | T | 59 | 83 | SVNTLLKELEEQLQKSLRSDFVISF | HHHHHHHHHHHHHTS---S-EEEEE | aaaaaaaaaaaaalbxbaxxxbbbb |
1e5d_A_350 | 1e5d | A | 350 | 374 | ESTKVLAEWLTGMGFDMPATPVKVK | HHHHHHHHHHHHTT-B--S--EEEE | aaaaaaaaaaaaavxxbabxpxbbx |
1kkh_A_79 | 1kkh | A | 80 | 104 | YCLCAIKNTLDYLNIEPKTGFKINI | HHHHHHHHHHHHTT----S-EEEEE | aaaaaaaaaaaaalbbwabxbbbbb |
1mp9_A_77 | 1mp9 | A | 82 | 106 | KAVKRIIKTLKKYGMQLTGKPKIQI | HHHHHHHHHHHHTT---SS--EEEE | aaaaaaaaaaaaagxbbabxxxbbx |
1pie_A_101 | 1pie | A | 102 | 126 | NYVKGMIVMLKGAGYEIDKGFELLI | HHHHHHHHHHHHTT----S-EEEEE | aaaaaaaaaaaaavxbxabxbbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ais_A_73 | 1ais | A | 5IU5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE | Q - 103 |
1ais_A_73 | 1ais | A | 5IU5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE | N - 104 |
1ais_A_73 | 1ais | A | 5IU5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE | V - 106 |
1e5d_A_350 | 1e5d | A | FMNFLAVIN MONONUCLEOTIDE | E - 350 |
1e5d_A_350 | 1e5d | A | FMNFLAVIN MONONUCLEOTIDE | V - 373 |
1e5d_A_350 | 1e5d | A | FMNFLAVIN MONONUCLEOTIDE | K - 374 |
Clusters included in this Subclass |
CLUSTER: HE.8.14 |