ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 9.4.1

Subclass Accession number: 5988
Subclass: 9.4.1

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 1.1 (>75 %)  1.1.1 (>75 %)  1.1.1.37 3.1 (>75 %)  3.1.1 (>75 %)  3.1.1.3
GO : GO:0004091 (>75 %)  GO:0004771 (>75 %)  GO:0016614 (>75 %)  GO:0016615 (>75 %)  GO:0016616 (>75 %)  GO:0016788 (>75 %)  GO:0016789 (>75 %)
SCOP : 51734 (>75 %)  51735 (>75 %)  51848 (>75 %)  53473 (>75 %)  53474 (>75 %)  53475 (>75 %)

Number of loops: 4

Average sequence ID (%) : 70.0 +/- 7.8
Average RMSD (Å) : 0.325 +/- 0.050

Consensus geometry

d (Å): 11

delta (°): 90-135

theta (°): 135-180

rho (°): 225-270

Consensus Sequence:	XLSPhXKcLhpRA
(φψ)-conformation:	aapaaaplababb

Pattern:	[A]	[G]	[G]	[AEQ]	[S]	[V]	[S]	[ILV]	x	[LTV]	[L]	[S]	[P]	[LY]	[ANT]	[K]	[GN]	[L]	[FI]	[HKR]	[R]	[A]	[I]	[S]	[EQ]
Conservation:	0.249	1.571	1.571	-1.382	0.249	0.249	0.249	-0.638	-1.581	-1.442	0.249	0.249	2.232	-0.957	-1.585	0.910	-0.406	0.249	-0.700	-0.909	0.910	0.249	0.249	0.249	-0.079

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1f6w_A_195	1f6w	A	195	219	AGGASVSLQTLSPYNKGLIRRAISQ	HHHHHHHHHHH-GGGTTT-SEEEEE	aaaaaaaaaaaxaaapvababbbbx
1k4y_A_222	1k4y	A	222	246	AGGQSVSILLLSPLTKNLFHRAISE	HHHHHHHHHHH-GGGTTT-SEEEEE	aaaaaaaaaaaxaaapvababbbbb
1mx1_A_1222	1mx1	A	1222	1246	AGGESVSVLVLSPLAKNLFHRAISE	HHHHHHHHHHT-GGGTTS-SEEEEE	aaaaaaaaaaabaaaxvababbbbb
2bce_*_195	2bce	-	195	219	AGGASVSLQTLSPYNKGLIKRAISQ	HHHHHHHHHHH-GGGTTT-SEEEEE	aaaaaaaaaaaxaaaxvababbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1mx1_A_1222	1mx1	A	THATACRINE	A - 1222

Clusters included in this Subclass