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Information on SUBCLASS 1.1.15
Subclass Accession number: 2039
Subclass: 1.1.15 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 10.1 +/- 13.9
Average RMSD (Å) : 0.675 +/- 0.205

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 0-45 rho (°): 225-270
Consensus Sequence: hppXX
(φψ)-conformation: aapaa
Pattern: [knpqs][aekn][agitv][aflvy][nqrsy][nst]xxx[afikm][aeqr]
Conservation:-0.0910.271-0.5110.055-0.1652.734-1.203-0.532-0.263-0.5410.246
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ei9_A_1681ei9   A168178NAGAYNKAIQEHHHHTSHHHHHaaaaaxaaaaa
1jb0_A_1871jb0   A187197LEWFQNVESMLHHHHT-HHHHHaaaaaxaaaaa
1ktb_A_2751ktb   A278288KKILQNRLMIQHHHHT-HHHHHaaaaapaaaaa
1nvu_S_8811nvu   S881891SPVYRLDHTFEHHHHT-HHHHHaaaaaxaaaaa
1on3_A_4601on3   A472482QNAFNTPYVAAHHHHSSHHHHHaaaaabaaaaa
1uas_A_2551uas   A258268KNILSNSEVIAHHHHT-HHHHHaaaaaxaaaaa
1urs_A_3351urs   A335345SAVQSSPTFKAHHHHT-HHHHHaaaaaxaaaaa
5csm_A_65csm   A616PETVLNLQNIRHHHHS-HHHHHaaaaaxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1jb0_A_1871jb0   A     CL1ALPHA CHLOROPHYLL A L - 187
1jb0_A_1871jb0   A     CACALCIUM ION W - 189
1jb0_A_1871jb0   A     CL1ALPHA CHLOROPHYLL A W - 189
1jb0_A_1871jb0   A     CACALCIUM ION F - 190
1jb0_A_1871jb0   A     CL1ALPHA CHLOROPHYLL A F - 190
1jb0_A_1871jb0   A     CL1ALPHA CHLOROPHYLL A Q - 191
1jb0_A_1871jb0   A     CACALCIUM ION N - 192
1jb0_A_1871jb0   A     CL1ALPHA CHLOROPHYLL A N - 192
1jb0_A_1871jb0   A     CACALCIUM ION V - 193
1jb0_A_1871jb0   A     CL1ALPHA CHLOROPHYLL A V - 193
1jb0_A_1871jb0   A     CL1ALPHA CHLOROPHYLL A E - 194
1jb0_A_1871jb0   A     CACALCIUM ION S - 195
1jb0_A_1871jb0   A     CL1ALPHA CHLOROPHYLL A S - 195
1jb0_A_1871jb0   A     CACALCIUM ION M - 196
1jb0_A_1871jb0   A     CL1ALPHA CHLOROPHYLL A M - 196
1jb0_A_1871jb0   A     CACALCIUM ION L - 197
1jb0_A_1871jb0   A     CL1ALPHA CHLOROPHYLL A L - 197
1jb0_A_1871jb0   A     CACALCIUM ION N - 198
1jb0_A_1871jb0   A     CL1ALPHA CHLOROPHYLL A N - 198
1jb0_A_1871jb0   A     CACALCIUM ION H - 199
1jb0_A_1871jb0   A     CL1ALPHA CHLOROPHYLL A H - 199
1jb0_A_1871jb0   A     CACALCIUM ION H - 200
1jb0_A_1871jb0   A     CL1ALPHA CHLOROPHYLL A H - 200
1jb0_A_1871jb0   A     CACALCIUM ION L - 201
1jb0_A_1871jb0   A     CL1ALPHA CHLOROPHYLL A L - 201
1jb0_A_1871jb0   A     CACALCIUM ION A - 202
1jb0_A_1871jb0   A     CL1ALPHA CHLOROPHYLL A A - 202
1ktb_A_2751ktb   A     CRYPROPANE-1,2,3-TRIOL Q - 288
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
5csm_A_65csm   A ACTACTIVE SITE.L - 12
5csm_A_65csm   A ACTACTIVE SITE.R - 16
5csm_A_65csm   A ACTACTIVE SITE.L - 19

Clusters included in this Subclass
CLUSTER: HH.2.92
CLUSTER: HH.3.99