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Information on SUBCLASS 1.1.6
Subclass Accession number: 4353
Subclass: 1.1.6 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 28

Average sequence ID (%) : 9.3 +/- 12.5
Average RMSD (Å) : 0.582 +/- 0.168

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 45-90 rho (°): 180-225
Consensus Sequence: XXpXX
(φψ)-conformation: aapaa
Pattern: xxxx[degknqs]xxxxx
Conservation:-0.472-0.741-0.322-0.4222.740-0.4970.215-0.363-0.015-0.123
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1byb_*_4231byb   -423432DDLLQKSNFNHHHHSHHHHHaaaapaaaaa
1dbh_A_3891dbh   A389398KICSKSLAKRHHHHSHHHHHaaaapaaaaa
1dpe_*_4131dpe   -417426ATEFSCAASEHHHHSHHHHHaaaaxaaaaa
1ek9_A_2091ek9   A216225AEKRNLSLLQHHHH-HHHHHaaaaxaaaaa
1elj_A_2771elj   A286295WLTTSEESIKHHHH-HHHHHaaaaxaaaaa
1emu_A_2341emu   A237246SFLKSDIYLEHHHTSHHHHHaaaaxaaaaa
1f28_A_881f28   A8897DANGSREYLDHHHHSHHHHHaaaaxaaaaa
1fc4_A_2581fc4   A264273LRQRSRPYLFHHHH-HHHHHaaaaxaaaaa
1fhj_B_511fhj   B5362AVMSNAKVKAHHHH-HHHHHaaaaxaaaaa
1ire_A_1241ire   A124133NWFKEPQYRSHHHHSHHHHHaaaaxaaaaa
1k3x_A_1151k3x   A115124QLTTHPFLQRHHHHSHHHHHaaaapaaaaa
1mxr_A_1331mxr   A139148DIVTNEQIQKHHHH-HHHHHaaaaxaaaaa
1nm8_A_5151nm8   A515524DIFMDTSYAIHHHHSHHHHHaaaaxaaaaa
1o7t_A_2391o7t   A247256AFLAGKEGQRHHHHSHHHHHaaaaxaaaaa
1ogi_A_1591ogi   A167176WRMFKDAERAHHHH-HHHHHaaaaxaaaaa
1on3_A_2191on3   A220229DELGGAEAHMHHHHSHHHHHaaaaxaaaaa
1p5h_A_3531p5h   A355364ELAHDPSLQKHHHH-HHHHHaaaaxaaaaa
1q35_A_2431q35   A251260EYLSGEKAQGHHHHSHHHHHaaaaxaaaaa
1q4m_A_1631q4m   A166175HRWGNDGFKQHHHHSHHHHHaaaaxaaaaa
1q5n_A_121q5n   A1524TEIFSDRALVHHHTSHHHHHaaaaxaaaaa
1qla_B_1561qla   B157166CIAACGTKIMHHHT-HHHHHaaaaxaaaaa
1rtw_A_1501rtw   A154163NHWSSQEFGEHHHHSHHHHHaaaaxaaaaa
1s14_A_10861s14   A10901099ILCISVVNALHHHTSHHHHHaaaaxaaaaa
1spg_B_511spg   B5362AILGNAKVAEHHHH-HHHHHaaaapaaaaa
1ub9_A_111ub9   A1120HILGNPVRLGHHHHSHHHHHaaaapaaaaa
1urs_A_3351urs   A336345AVQSSPTFKAHHHT-HHHHHaaaaxaaaaa
1v7r_A_1601v7r   A163172KNALSHRGKAHHTTSHHHHHaaaaxaaaaa
2ahj_A_1252ahj   A125134TWYKSFEYRAHHHHSHHHHHaaaaxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dbh_A_3891dbh   A     MSESELENOMETHIONINE K - 389
1dbh_A_3891dbh   A     MSESELENOMETHIONINE I - 390
1dbh_A_3891dbh   A     MSESELENOMETHIONINE C - 391
1dbh_A_3891dbh   A     MSESELENOMETHIONINE S - 392
1elj_A_2771elj   A     CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE D - 278
1elj_A_2771elj   A     CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE A - 279
1elj_A_2771elj   A     CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE K - 282
1elj_A_2771elj   A     CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE F - 283
1f28_A_881f28   A     F89S)-2-(5(((1,2-DIHYDRO-3-METHYL-1-OXOBENZO(F)QUINAZOLIN -9-YL)METHYL)AMINO)1-OXO-2-ISOINDOLINYL)GLUTARIC ACID N - 90
1fc4_A_2581fc4   A     AKB2-AMINO-3-KETOBUTYRIC ACID L - 272
1fc4_A_2581fc4   A     MSESELENOMETHIONINE F - 273
1fc4_A_2581fc4   A     AKB2-AMINO-3-KETOBUTYRIC ACID F - 273
1fc4_A_2581fc4   A     PLPPYRIDOXAL-5'-PHOSPHATE F - 273
1fhj_B_511fhj   B     HEMPROTOPORPHYRIN IX CONTAINING FE H - 63
1fhj_B_511fhj   B     HEMPROTOPORPHYRIN IX CONTAINING FE K - 66
1fhj_B_511fhj   B     HEMPROTOPORPHYRIN IX CONTAINING FE V - 67
1fhj_B_511fhj   B     HEMPROTOPORPHYRIN IX CONTAINING FE S - 70
1fhj_B_511fhj   B     HEMPROTOPORPHYRIN IX CONTAINING FE F - 71
1ire_A_1241ire   A     CSD3-SULFINOALANINE F - 126
1ire_A_1241ire   A     CEAS-HYDROXY-CYSTEINE F - 126
1ire_A_1241ire   A     CSD3-SULFINOALANINE K - 127
1ire_A_1241ire   A     CSD3-SULFINOALANINE E - 128
1ire_A_1241ire   A     CSD3-SULFINOALANINE R - 132
1k3x_A_1151k3x   A     GOLGLYCEROL T - 117
1k3x_A_1151k3x   A     GOLGLYCEROL T - 118
1k3x_A_1151k3x   A     GOLGLYCEROL Q - 123
1k3x_A_1151k3x   A     GOLGLYCEROL R - 124
1ogi_A_1591ogi   A     FADFLAVIN-ADENINE DINUCLEOTIDE T - 160
1ogi_A_1591ogi   A     FADFLAVIN-ADENINE DINUCLEOTIDE P - 161
1q4m_A_1631q4m   A     MSESELENOMETHIONINE V - 180
1q4m_A_1631q4m   A     MSESELENOMETHIONINE I - 183
1q4m_A_1631q4m   A     MSESELENOMETHIONINE A - 184
1q4m_A_1631q4m   A     MSESELENOMETHIONINE C - 187
1qla_B_1561qla   B     FS4IRON/SULFUR CLUSTER C - 156
1qla_B_1561qla   B     F3SFE3-S4 CLUSTER C - 157
1qla_B_1561qla   B     FS4IRON/SULFUR CLUSTER C - 157
1qla_B_1561qla   B     FS4IRON/SULFUR CLUSTER I - 158
1qla_B_1561qla   B     F3SFE3-S4 CLUSTER A - 160
1qla_B_1561qla   B     F3SFE3-S4 CLUSTER C - 161
1qla_B_1561qla   B     F3SFE3-S4 CLUSTER G - 162
1qla_B_1561qla   B     F3SFE3-S4 CLUSTER T - 163
1qla_B_1561qla   B     F3SFE3-S4 CLUSTER K - 164
1rtw_A_1501rtw   A     MSESELENOMETHIONINE Q - 150
1rtw_A_1501rtw   A     MSESELENOMETHIONINE E - 151
1rtw_A_1501rtw   A     MSESELENOMETHIONINE F - 152
1rtw_A_1501rtw   A     MSESELENOMETHIONINE I - 153
1rtw_A_1501rtw   A     MSESELENOMETHIONINE H - 155
1rtw_A_1501rtw   A     MP5(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL DIHYDROGEN PHOSPHATE H - 155
1rtw_A_1501rtw   A     MSESELENOMETHIONINE W - 156
1rtw_A_1501rtw   A     MP5(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL DIHYDROGEN PHOSPHATE W - 156
1rtw_A_1501rtw   A     MP5(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL DIHYDROGEN PHOSPHATE F - 161
1rtw_A_1501rtw   A     MSESELENOMETHIONINE Y - 164
1rtw_A_1501rtw   A     MP5(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL DIHYDROGEN PHOSPHATE Y - 164
1rtw_A_1501rtw   A     MSESELENOMETHIONINE E - 169
1rtw_A_1501rtw   A     MSESELENOMETHIONINE N - 173
1rtw_A_1501rtw   A     MSESELENOMETHIONINE E - 177
1s14_A_10861s14   A     NOVNOVOBIOCIN A - 1086
1s14_A_10861s14   A     NOVNOVOBIOCIN I - 1090
1spg_B_511spg   B     CMOCARBON MONOXIDE H - 63
1spg_B_511spg   B     HEMPROTOPORPHYRIN IX CONTAINING FE T - 66
1spg_B_511spg   B     CMOCARBON MONOXIDE V - 67
1spg_B_511spg   B     HEMPROTOPORPHYRIN IX CONTAINING FE G - 69
1spg_B_511spg   B     HEMPROTOPORPHYRIN IX CONTAINING FE G - 70
1spg_B_511spg   B     HEMPROTOPORPHYRIN IX CONTAINING FE L - 71
1spg_B_511spg   B     HEMPROTOPORPHYRIN IX CONTAINING FE R - 73
2ahj_A_1252ahj   A     CSD3-SULFINOALANINE Y - 127
2ahj_A_1252ahj   A     CEAS-HYDROXY-CYSTEINE Y - 127
2ahj_A_1252ahj   A     CSD3-SULFINOALANINE K - 128
2ahj_A_1252ahj   A     CSD3-SULFINOALANINE R - 133
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ogi_A_1591ogi   A AC1FAD BINDING SITE FOR CHAIN AT - 160
1qla_B_1561qla   B FS1FE4S4 IRON SULPHUR CENTRE LIGANDS FOR CHAIN BC - 157
1qla_B_1561qla   B FS5FE3S4 IRON SULPHUR CENTRE LIGANDS FOR CHAIN BC - 161

Clusters included in this Subclass
CLUSTER: HH.0.35
CLUSTER: HH.1.45
CLUSTER: HH.2.103
CLUSTER: HH.2.41