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Information on SUBCLASS 1.1.8
Subclass Accession number: 4355
Subclass: 1.1.8 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 23

Average sequence ID (%) : 9.4 +/- 13.2
Average RMSD (Å) : 0.478 +/- 0.168

Consensus geometry
d (Å): 7 delta (°): 0-45 theta (°): 90-135 rho (°): 180-225
Consensus Sequence: XXpXX
(φψ)-conformation: aapaa
Pattern: xxxxx[denqrst][ekpqrs]xx[adgkqrs]
Conservation:-0.512-1.165-0.438-0.416-0.2741.2612.237-0.138-0.5720.016
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ajs_A_3011ajs   A307316ARTLSDPELFHHHHHSHHHHaaaaabaaaa
1aor_A_2141aor   A226235NKLRNDPVAGHHHHHSHHHHaaaaaxaaaa
1bdb_*_2301bdb   -232241YVFFATRGDAHHHHH-HHHHaaaaaxaaaa
1c1k_A_681c1k   A7786SNLVANQDAWHHHHH-HHHHaaaaaxaaaa
1cza_N_4811cza   N495504MELGLRKQTHHHHHHSHHHHaaaaaxaaaa
1dpg_A_1881dpg   A190199ALRFGNPIFDHHHHT-HHHHaaaaabaaaa
1ea5_A_2011ea5   A207216GMHILSPGSRHHHHH-HHHHaaaaaxaaaa
1ezv_F_51ezv   F1322DYILKSPVLSHHHHHSHHHHaaaaaxaaaa
1f5q_B_1641f5q   B179188FCALCDGRSAHHHHH-HHHHaaaaabaaaa
1gee_A_1971gee   A197206AEKFADPEQRHHHHHSHHHHaaaaaxaaaa
1inp_*_41inp   -2029RACRQQETLFHHHHHSHHHHaaaaaxaaaa
1j7n_A_2101j7n   A221230FAYYIEPQHRHHHHHSHHHHaaaaaxaaaa
1k0m_A_2041k0m   A211220SNAYAREEFAHHHHTSHHHHaaaaabaaaa
1k0r_A_1861k0r   A192201LFSLEVPEIAHHHHH-HHHHaaaaabaaaa
1kyg_A_751kyg   A8089AWHSSSETIAHHHTT-HHHHaaaaabaaaa
1lm4_A_281lm4   A4150LVNSQDEEIAHHHHHSHHHHaaaaaxaaaa
1m56_A_3791m56   A398407GIVLSQASVDHHHHHSHHHHaaaaaxaaaa
1n5m_A_2041n5m   A210219GMHILSLPSRHHHHHSHHHHaaaaabaaaa
1nrl_A_2401nrl   A256265SFAKVISYFRHHHHH-HHHHaaaaaxaaaa
1ofw_A_971ofw   A103112QQTKERRECAHHHHHSHHHHaaaaabaaaa
1ogl_A_1901ogl   A201210NQIRQLKGYKHHHHHSHHHHaaaaaxaaaa
1pdu_A_4741pdu   A490499DHVTYNAEAQHHHHH-HHHHaaaaaxaaaa
1r7i_A_2411r7i   A253262AFAAVDPYRAHHHHH-HHHHaaaaabaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gee_A_1971gee   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE F - 200
1m56_A_3791m56   A     CACALCIUM ION F - 391
1m56_A_3791m56   A     HEAHEME-A F - 391
1m56_A_3791m56   A     HEAHEME-A T - 392
1m56_A_3791m56   A     HEAHEME-A G - 394
1m56_A_3791m56   A     HEAHEME-A G - 395
1m56_A_3791m56   A     HEAHEME-A V - 396
1m56_A_3791m56   A     HEAHEME-A G - 398
1m56_A_3791m56   A     HEAHEME-A I - 399
1m56_A_3791m56   A     CACALCIUM ION L - 401
1m56_A_3791m56   A     HEAHEME-A L - 401
1m56_A_3791m56   A     HEAHEME-A S - 402
1m56_A_3791m56   A     HEAHEME-A Q - 403
1m56_A_3791m56   A     CACALCIUM ION D - 407
1m56_A_3791m56   A     HEAHEME-A D - 407
1m56_A_3791m56   A     HEAHEME-A Y - 410
1nrl_A_2401nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER L - 240
1nrl_A_2401nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER H - 242
1nrl_A_2401nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER M - 243
1nrl_A_2401nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER A - 244
1nrl_A_2401nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER D - 245
1nrl_A_2401nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER M - 246
1nrl_A_2401nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER S - 247
1nrl_A_2401nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER F - 251
1ofw_A_971ofw   A     HECHEME C C - 97
1ofw_A_971ofw   A     HECHEME C V - 98
1ofw_A_971ofw   A     HECHEME C C - 100
1ofw_A_971ofw   A     HECHEME C H - 101
1ofw_A_971ofw   A     HECHEME C E - 102
1ofw_A_971ofw   A     HECHEME C Q - 103
1ofw_A_971ofw   A     HECHEME C Q - 104
1ofw_A_971ofw   A     HECHEME C T - 105
1ofw_A_971ofw   A     HECHEME C R - 108
1ofw_A_971ofw   A     HECHEME C R - 109
1ofw_A_971ofw   A     HECHEME C E - 110
1ofw_A_971ofw   A     HECHEME C C - 111
1ofw_A_971ofw   A     HECHEME C A - 112
1r7i_A_2411r7i   A     GOLGLYCEROL R - 261
1r7i_A_2411r7i   A     GOLGLYCEROL T - 264
1r7i_A_2411r7i   A     GOLGLYCEROL H - 265
1r7i_A_2411r7i   A     GOLGLYCEROL K - 267
1r7i_A_2411r7i   A     GOLGLYCEROL G - 268
1r7i_A_2411r7i   A     GOLGLYCEROL I - 269
1r7i_A_2411r7i   A     GOLGLYCEROL N - 271
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ofw_A_971ofw   A AC3HEC BINDING SITE FOR CHAIN AC - 97
1ofw_A_971ofw   A AC3HEC BINDING SITE FOR CHAIN AC - 100
1ofw_A_971ofw   A AC3HEC BINDING SITE FOR CHAIN AH - 101
1ofw_A_971ofw   A AC3HEC BINDING SITE FOR CHAIN AQ - 104
1ofw_A_971ofw   A AC4HEC BINDING SITE FOR CHAIN AT - 105

Clusters included in this Subclass
CLUSTER: HH.0.19
CLUSTER: HH.1.37
CLUSTER: HH.3.328