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Information on SUBCLASS 1.2.23
Subclass Accession number: 4441
Subclass: 1.2.23 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 38.1 +/- 28.6
Average RMSD (Å) : 0.275 +/- 0.150

Consensus geometry
d (Å): 5 delta (°): 45-90 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: hXpPc
(φψ)-conformation: aabaa
Pattern: [EN][DKN]x[LM]xx[KY][AL]x[NY][P][DK][IK][VY]
Conservation:0.442-0.112-0.7630.677-1.024-0.6400.174-0.332-1.1730.1072.8620.070-0.6580.370
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ccr_*_691ccr   -6982ENTLYDYLLNPKKYHHHHHHHHH-HHHHaaaaaaaaabaaaa
1n83_A_4661n83   A486499EKLMAFKAIYPDIVHHHHHHHHH-HHHHaaaaaaaaabaaaa
1ycc_*_611ycc   -6174ENNMSEYLTNPKKYHHHHHHHHH-HHHHaaaaaaaaabaaaa
5cyt_R_615cyt   R6174NDTLMEYLENPKKYHHHHHHHHH-HHHHaaaaaaaaabaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ccr_*_691ccr   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 72
1ccr_*_691ccr   *     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 75
1ccr_*_691ccr   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 76
1ccr_*_691ccr   *     TMLMETHYL PART OF N-TRIMETHYLLYSINE L - 77
1ccr_*_691ccr   *     TMLMETHYL PART OF N-TRIMETHYLLYSINE N - 78
1ccr_*_691ccr   *     TMLMETHYL PART OF N-TRIMETHYLLYSINE K - 80
1ccr_*_691ccr   *     TMLMETHYL PART OF N-TRIMETHYLLYSINE K - 81
1n83_A_4661n83   A     CLRCHOLESTEROL H - 484
1n83_A_4661n83   A     CLRCHOLESTEROL K - 487
1ycc_*_611ycc   *     HEMPROTOPORPHYRIN IX CONTAINING FE M - 64
1ycc_*_611ycc   *     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 67
1ycc_*_611ycc   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 68
1ycc_*_611ycc   *     TMLMETHYL PART OF N-TRIMETHYLLYSINE K - 72
5cyt_R_615cyt   R     HEMPROTOPORPHYRIN IX CONTAINING FE L - 64

Clusters included in this Subclass
CLUSTER: HH.0.43