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Information on SUBCLASS 1.2.28
Subclass Accession number: 4446
Subclass: 1.2.28 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 13.6 +/- 12.5
Average RMSD (Å) : 0.233 +/- 0.058

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: pLXPX
(φψ)-conformation: aabaa
Pattern: [AIV][EKT][AKT]x[ALY][EKS][DES][L][ACI][DEK][L]x[P][DGS]x[CRT][DER][DEQ][FLY]x[AQS][NRS]
Conservation:-0.094-0.317-0.540-0.688-0.763-0.0940.1281.390-0.3170.2021.390-1.1343.395-0.243-0.911-0.614-0.0940.4990.277-0.985-0.317-0.169
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1izn_B_211izn   B2142IEKNLSDLIDLVPSLCEDLLSSHHHHHHHHHHH-GGGHHHHHHHaaaaaaaaaaabaaaaaaaaaa
1pq4_A_1841pq4   A191212ATTIAKELAELDPDNRDQYEANHHHHHHHHHHH-GGGHHHHHHHaaaaaaaaaaabaaaaaaaaaa
1toa_A_1381toa   A145166VKAVYESLCKLLPGKTREFTQRHHHHHHHHHHH-GGGHHHHHHHaaaaaaaaaaabaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1toa_A_1381toa   A     GOLGLYCEROL K - 139
1toa_A_1381toa   A     GOLGLYCEROL S - 142
1toa_A_1381toa   A     GOLGLYCEROL Y - 143
1toa_A_1381toa   A     GOLGLYCEROL K - 146
1toa_A_1381toa   A     GOLGLYCEROL Y - 167
1toa_A_1381toa   A     GOLGLYCEROL Q - 171

Clusters included in this Subclass
CLUSTER: HH.3.246