Information on SUBCLASS 1.2.28 |
Subclass Accession number: 4446
Subclass: 1.2.28 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 13.6 +/- 12.5 Average RMSD (Å) : 0.233 +/- 0.058 Consensus geometry
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Consensus Sequence: | pLXPX |
(φψ)-conformation: | aabaa |
Pattern: | [AIV] | [EKT] | [AKT] | x | [ALY] | [EKS] | [DES] | [L] | [ACI] | [DEK] | [L] | x | [P] | [DGS] | x | [CRT] | [DER] | [DEQ] | [FLY] | x | [AQS] | [NRS] |
Conservation: | -0.094 | -0.317 | -0.540 | -0.688 | -0.763 | -0.094 | 0.128 | 1.390 | -0.317 | 0.202 | 1.390 | -1.134 | 3.395 | -0.243 | -0.911 | -0.614 | -0.094 | 0.499 | 0.277 | -0.985 | -0.317 | -0.169 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1izn_B_21 | 1izn | B | 21 | 42 | IEKNLSDLIDLVPSLCEDLLSS | HHHHHHHHHHH-GGGHHHHHHH | aaaaaaaaaaabaaaaaaaaaa |
1pq4_A_184 | 1pq4 | A | 191 | 212 | ATTIAKELAELDPDNRDQYEAN | HHHHHHHHHHH-GGGHHHHHHH | aaaaaaaaaaabaaaaaaaaaa |
1toa_A_138 | 1toa | A | 145 | 166 | VKAVYESLCKLLPGKTREFTQR | HHHHHHHHHHH-GGGHHHHHHH | aaaaaaaaaaabaaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1toa_A_138 | 1toa | A | GOLGLYCEROL | K - 139 |
1toa_A_138 | 1toa | A | GOLGLYCEROL | S - 142 |
1toa_A_138 | 1toa | A | GOLGLYCEROL | Y - 143 |
1toa_A_138 | 1toa | A | GOLGLYCEROL | K - 146 |
1toa_A_138 | 1toa | A | GOLGLYCEROL | Y - 167 |
1toa_A_138 | 1toa | A | GOLGLYCEROL | Q - 171 |
Clusters included in this Subclass |
CLUSTER: HH.3.246 |