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Information on SUBCLASS 1.2.4
Subclass Accession number: 4422
Subclass: 1.2.4 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 25

Average sequence ID (%) : 13.5 +/- 15.7
Average RMSD (Å) : 0.512 +/- 0.176

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: XpphX
(φψ)-conformation: aabaa
Pattern: xxx[dehknsty][adgknrs][acdps][adepst][afgilmpv][afiklv]x
Conservation:-0.646-0.723-0.4680.4280.1972.645-0.103-0.377-0.391-0.562
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1acf_*_391acf   -4756GAFNNADAIRHHHH--HHHHaaaabaaaaa
1e85_A_711e85   A7180EIWSDAASFKHHHHTHHHHHaaaabaaaaa
1eu8_A_3421eu8   A344353VVSKSPHLKEHHHH-THHHHaaaabaaaaa
1f2k_A_10391f2k   A10471056NAFKDATAIRHHHH-THHHHaaaabaaaaa
1fs7_A_761fs7   A7685MLKEKPALVVHHHH-THHHHaaaabaaaaa
1gxs_B_4161gxs   B416425VPVHRPAQAFHHHH-HHHHHaaaabaaaaa
1i1n_A_1121i1n   A122131VRKDDPTLLSHHHH-THHHHaaaabaaaaa
1imj_A_1901imj   A190199CYLDKPEEWHHHHH-HHHHHaaaabaaaaa
1j8f_A_1211j8f   A123132YFKKHPEPFFHHHH--HHHHaaaabaaaaa
1jr7_A_541jr7   A5665ALEYKSFLRFHHHH-THHHHaaaabaaaaa
1kew_A_861kew   A8897RSITGPAAFIHHHH-THHHHaaaabaaaaa
1lt8_A_481lt8   A4857AAVEHPEAVRHHHH-HHHHHaaaabaaaaa
1oc2_A_881oc2   A9099NSLNDPSPFIHHHH--HHHHaaaabaaaaa
1orr_A_861orr   A8897TSIDNPCMDFHHHH-HHHHHaaaabaaaaa
1q1a_A_691q1a   A7180FFQSDPLPFYHHHH--HHHHaaaabaaaaa
1q7z_A_381q7z   A3847LNIKAPDVVLHHHH-HHHHHaaaabaaaaa
1q8i_A_3161q8i   A320329RFAEDKPALAHHHH-HHHHHaaaabaaaaa
1q9i_A_4231q9i   A425434VRKSLCKIDKHHHH-TTHHHaaaabaaaaa
1qdb_A_751qdb   A7584MLAKDPALVIHHHH-THHHHaaaabwaaaa
1qo2_A_1031qo2   A104113KVLEDPSFLKHHHH-TTHHHaaaabaaaaa
1r6d_A_891r6d   A91100RSIAGASVFTHHHH--HHHHaaaabaaaaa
1say_A_3301say   A330339ALETDDALAKHHHH-HHHHHaaaabaaaaa
1uek_A_2031uek   A206215AFRLFPELKEHHHH-THHHHaaaabaaaaa
1vj5_A_5251vj5   A525534TQMDKPTEVNHHHHSHHHHHaaaabaaaaa
1ypr_A_391ypr   A4756QGFDNPAGLQHHTT-THHHHaaaabaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e85_A_711e85   A     HECHEME C I - 72
1e85_A_711e85   A     HECHEME C F - 79
1e85_A_711e85   A     HECHEME C K - 82
1e85_A_711e85   A     HECHEME C Q - 83
1e85_A_711e85   A     HECHEME C F - 86
1e85_A_711e85   A     HECHEME C I - 90
1eu8_A_3421eu8   A     PTPLATINUM (II) ION A - 343
1eu8_A_3421eu8   A     PTPLATINUM (II) ION K - 347
1i1n_A_1121i1n   A     SAHS-ADENOSYL-L-HOMOCYSTEINE L - 114
1kew_A_861kew   A     TYDTHYMIDINE-5'- DIPHOSPHATE V - 86
1kew_A_861kew   A     TYDTHYMIDINE-5'- DIPHOSPHATE D - 87
1kew_A_861kew   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 99
1kew_A_861kew   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE N - 100
1oc2_A_881oc2   A     TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE N - 88
1oc2_A_881oc2   A     TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE D - 89
1oc2_A_881oc2   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE H - 100
1oc2_A_881oc2   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 101
1oc2_A_881oc2   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE N - 102
1orr_A_861orr   A     CDPCYTIDINE-5'-DIPHOSPHATE M - 86
1orr_A_861orr   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 99
1q9i_A_4231q9i   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 431
1q9i_A_4231q9i   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 433
1q9i_A_4231q9i   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 434
1q9i_A_4231q9i   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 435
1q9i_A_4231q9i   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 437
1q9i_A_4231q9i   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 438
1r6d_A_891r6d   A     DAU2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE V - 89
1r6d_A_891r6d   A     DAU2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE D - 90
1r6d_A_891r6d   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 102
1r6d_A_891r6d   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE N - 103
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1oc2_A_881oc2   A AC1TDX BINDING SITE FOR CHAIN AN - 88

Clusters included in this Subclass
CLUSTER: HH.1.42
CLUSTER: HH.2.40
CLUSTER: HH.3.47