Information on SUBCLASS 1.2.5 |
Subclass Accession number: 8827
Subclass: 1.2.5 Type: HH alpha-alpha DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 13 Average sequence ID (%) : 12.1 +/- 17.7 Average RMSD (Å) : 0.623 +/- 0.217 Consensus geometry
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Consensus Sequence: | XpXXX |
(φψ)-conformation: | aabaa |
Pattern: | [clty] | x | [adkrt] | [CDHQSTY] | x | [dekpqs] | [aegnrt] | [AFIKLTV] | x | [dehknqry] |
Conservation: | -0.926 | 0.947 | 0.472 | 0.846 | 0.711 | 0.709 | -1.616 | 0.341 | -1.599 | 0.114 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a8r_A_202 | 1a8r | A | 202 | 211 | LFKSSQNTRH | HHHH-HHHHH | aaaaxaaaaa |
1d3c_A_397 | 1d3c | A | 397 | 406 | LRKCNPAIAY | HHHH-HHHHH | aaaabaaaaa |
1dmt_A_484 | 1dmt | A | 484 | 493 | DIVSNDNKLN | HHHH-HHHHH | aaaabaaaaa |
1fi4_A_214 | 1fi4 | A | 215 | 224 | TVATSELFKE | HHHH-SHHHH | aaaaxaaaaa |
1gtz_A_83 | 1gtz | A | 83 | 92 | YSHTSVAILD | HHHH-HHHHH | aaaabaaaaa |
1hyo_A_95 | 1hyo | A | 95 | 104 | RLRDDKELRQ | HHHH-HHHHH | aaaaxaaaaa |
1nr6_A_220 | 1nr6 | A | 222 | 231 | LLDYFPGIHK | HHHHSHHHHH | aaaabwaaaa |
1og5_A_222 | 1og5 | A | 222 | 231 | LLDYFPGTHN | HHHH--HHHH | aaaabaaxga |
1omw_A_62 | 1omw | A | 72 | 81 | CLKHLEEAKP | HHHH-TTTHH | aaaabaaaaa |
1pam_A_397 | 1pam | A | 397 | 406 | LRKSNPAIAY | HHHH-HHHHH | aaaabaaaaa |
2baa_*_142 | 2baa | - | 142 | 151 | LVATDATVGF | HHHH-HHHHH | aaaabaaaaa |
2hgs_A_93 | 2hgs | A | 93 | 102 | TIKQDDFTAR | HHHH-HHHHH | aaaabaaaaa |
3gcb_*_168 | 3gcb | - | 168 | 177 | YSTTASRKWN | HHHHB-HHHH | aaaabaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1fi4_A_214 | 1fi4 | A | MSESELENOMETHIONINE | L - 214 |
1fi4_A_214 | 1fi4 | A | MSESELENOMETHIONINE | T - 215 |
1fi4_A_214 | 1fi4 | A | MSESELENOMETHIONINE | V - 216 |
1fi4_A_214 | 1fi4 | A | MSESELENOMETHIONINE | A - 217 |
1fi4_A_214 | 1fi4 | A | MSESELENOMETHIONINE | F - 222 |
1fi4_A_214 | 1fi4 | A | MSESELENOMETHIONINE | I - 226 |
1gtz_A_83 | 1gtz | A | DHK3-DEHYDROSHIKIMATE | Y - 83 |
1gtz_A_83 | 1gtz | A | TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | Y - 83 |
1gtz_A_83 | 1gtz | A | DHK3-DEHYDROSHIKIMATE | S - 84 |
1gtz_A_83 | 1gtz | A | DHK3-DEHYDROSHIKIMATE | H - 85 |
1gtz_A_83 | 1gtz | A | TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | T - 86 |
1gtz_A_83 | 1gtz | A | TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | S - 87 |
1gtz_A_83 | 1gtz | A | DHK3-DEHYDROSHIKIMATE | V - 88 |
1gtz_A_83 | 1gtz | A | TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | V - 88 |
1gtz_A_83 | 1gtz | A | DHK3-DEHYDROSHIKIMATE | D - 92 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1gtz_A_83 | 1gtz | A | DHADHK BINDING SITE FOR CHAIN A | H - 85 |
1gtz_A_83 | 1gtz | A | TRATRS BINDING SITE FOR CHAIN A | T - 86 |
1gtz_A_83 | 1gtz | A | TRATRS BINDING SITE FOR CHAIN A | S - 87 |
Clusters included in this Subclass |
CLUSTER: HH.1.49 |
CLUSTER: HH.2.53 |
CLUSTER: HH.2.94 |
CLUSTER: HH.3.174 |