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Information on SUBCLASS 1.2.5
Subclass Accession number: 4423
Subclass: 1.2.5 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 24

Average sequence ID (%) : 16.9 +/- 18.4
Average RMSD (Å) : 0.600 +/- 0.167

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 45-90 rho (°): 90-135
Consensus Sequence: XXchp
(φψ)-conformation: aabaa
Pattern: [agilmpv][afiklmtv][degkqrst][adegknqrst][adkn][kprt][adegqrs]xx[adeknqrst][cdehknqrs]
Conservation:-0.480-0.266-1.016-0.3321.4042.1340.357-0.211-1.350-0.060-0.179
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a4e_A_2441a4e   A250260IAGSNPDYCQQHHHH-TTHHHHaaaabaaaaaa
1ddz_A_1131ddz   A125135MLKQDPEFFNRHHHH-TTHHHHaaaabaaaaaa
1ddz_A_3671ddz   A379389MLKQDPQFFSNHHHH-TTHHHHaaaabaaaaaa
1dgf_A_2471dgf   A253263LSQEDPDYGIRHHHH-TTHHHHaaaabaaaaaa
1e93_A_2261e93   A232242LVGKDRESSQRHHHH-TTHHHHaaaabaaaaaa
1ez0_A_2641ez0   A266276AMRAKADLADQHHHH-TTHHHHaaaabaaaaaa
1fsl_A_221fsl   A3343ILEKAPAAKDLHHHH-TTHHHHaaaabaaaaaa
1g98_A_251g98   A2838LFDTDKERFNHHHHT-TTHHHHaaaabaaaaaa
1gvo_A_3241gvo   A325335DYIANPDLVARHHHH-TTHHHHaaaabaaaaaa
1gwe_A_2321gwe   A238248IAGENADFHRQHHHH-TTHHHHaaaabaaaaaa
1gzd_A_251gzd   A2838LFEGDKDRFNHHHHH-TTHHHHaaaaxaaaaaa
1h7w_A_1091h7w   A116126IFSDNPLGLTCHHHH-TTHHHHaaaabaaaaaa
1hlb_*_141hlb   -2737LMRNKTSFVTDHHHH-TTHHHHaaaabaaaaaa
1htp_*_821htp   -8292GLTGKPGLINSHHHH-TTHHHHaaaabaaaaaa
1iat_A_251iat   A2838LFDANKDRFNHHHHH-TTHHHHaaaabaaaaaa
1icp_A_3311icp   A332342LFISNPDLPKRHHHH-TTHHHHaaaabaaaaaa
1k9x_A_4211k9x   A437447IKKDIPDFEEKHHTTSTTHHHHaaaabaaaaaa
1m7s_A_2491m7s   A255265VQSKDYSHLTNHHHH-S-HHHHaaaabaaaaaa
1o94_A_3221o94   A323333PSIADPFLPQKHHHH-TTHHHHaaaabaaaaaa
1ogl_A_121ogl   A2636NIFMDPDWRQIHHHH-TTHHHHaaaabaaaaaa
1p80_A_3041p80   A310320LTGRDPDFHRRHHHH-TTHHHHaaaabaaaaaa
1qo2_A_1031qo2   A104114KVLEDPSFLKSHHHH-TTHHHHaaaabaaaaaa
1si8_A_2261si8   A232242IAGKNPDFHIEHHHH-TTHHHHaaaabaaaaaa
1st0_A_2981st0   A304314NLECDPRHYQQHHHH-TTHHHHaaaabaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1fsl_A_221fsl   A     NIONICOTINIC ACID F - 29
1fsl_A_221fsl   A     NIONICOTINIC ACID Y - 30
1fsl_A_221fsl   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 33
1fsl_A_221fsl   A     NIONICOTINIC ACID I - 33
1fsl_A_221fsl   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 37
1fsl_A_221fsl   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 40
1fsl_A_221fsl   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 43
1gvo_A_3241gvo   A     FMNFLAVIN MONONUCLEOTIDE R - 324
1gvo_A_3241gvo   A     FMNFLAVIN MONONUCLEOTIDE D - 325
1gvo_A_3241gvo   A     FMNFLAVIN MONONUCLEOTIDE I - 327
1h7w_A_1091h7w   A     FS4IRON/SULFUR CLUSTER N - 120
1h7w_A_1091h7w   A     FS4IRON/SULFUR CLUSTER G - 123
1h7w_A_1091h7w   A     FS4IRON/SULFUR CLUSTER C - 126
1h7w_A_1091h7w   A     FS4IRON/SULFUR CLUSTER G - 127
1h7w_A_1091h7w   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 129
1hlb_*_141hlb   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 39
1hlb_*_141hlb   *     HEMPROTOPORPHYRIN IX CONTAINING FE I - 42
1hlb_*_141hlb   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 43
1iat_A_251iat   A     SULSULFATE ANION R - 27
1icp_A_3311icp   A     FMNFLAVIN MONONUCLEOTIDE R - 331
1icp_A_3311icp   A     2PENONAETHYLENE GLYCOL R - 331
1icp_A_3311icp   A     FMNFLAVIN MONONUCLEOTIDE L - 332
1icp_A_3311icp   A     FMNFLAVIN MONONUCLEOTIDE I - 334
1o94_A_3221o94   A     FMNFLAVIN MONONUCLEOTIDE R - 322
1o94_A_3221o94   A     SF4IRON/SULFUR CLUSTER R - 322
1o94_A_3221o94   A     FMNFLAVIN MONONUCLEOTIDE P - 323
1o94_A_3221o94   A     SF4IRON/SULFUR CLUSTER P - 323
1o94_A_3221o94   A     FMNFLAVIN MONONUCLEOTIDE I - 325
1o94_A_3221o94   A     SF4IRON/SULFUR CLUSTER I - 325
1o94_A_3221o94   A     SF4IRON/SULFUR CLUSTER A - 326

Clusters included in this Subclass
CLUSTER: HH.2.45
CLUSTER: HH.3.34
CLUSTER: HH.4.39
CLUSTER: HH.4.53