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Information on SUBCLASS 1.2.6
Subclass Accession number: 2084
Subclass: 1.2.6 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 1 (>75 %)  
Number of loops: 14

Average sequence ID (%) : 10.8 +/- 12.7
Average RMSD (Å) : 0.543 +/- 0.183

Consensus geometry
d (Å): 5 delta (°): 0-45 theta (°): 90-135 rho (°): 180-225
Consensus Sequence: XXpXX
(φψ)-conformation: aabaa
Pattern: xx[filv]x[aeknqst][dhns]xxxx[adegkst]
Conservation:-0.196-0.2871.276-0.8490.6242.169-0.295-0.262-1.108-1.026-0.046
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8i_*_7771a8i   -788798SALYKNPREWTHHHHT-HHHHHaaaaabaaaaa
1gcv_A_41gcv   A1525QVLAKSPEAYGHHHHH-HHHHHaaaaabaaaaa
1hrd_A_331hrd   A3444PVVDAHPEYEEHHHHT-HHHHHaaaaabaaaaa
1ju3_A_1851ju3   A193203AAILNDVAGAAHHHHH-HHHHHaaaaabaaaaa
1kic_A_1851kic   A185195WNIYWDPASAKHHHHH-HHHHHaaaaabaaaaa
1m15_A_2881m15   A288298PKLAKDRKVLEHHHHHSHHHHHaaaaabaaaaa
1mba_*_41mba   -1525APVFANKNANGHHHHHTHHHHHaaaaabaaaaa
1msw_D_6701msw   D684694SVSVTVVAAVEHHHHH-HHHHHaaaaabaaaaa
1on2_A_1071on2   A118128QYFEEDDARKKHHHHT-HHHHHaaaaabaaaaa
1r7i_A_1351r7i   A141151LANRKDQLLNSHHHHHTHHHHHaaaaabaaaaa
1vj5_A_3901vj5   A393403AELEQNLSRTFHHHHHTHHHHHaaaaabaaaaa
2gdm_*_52gdm   -1626EEFNANIPKHTHHHHTTHHHHHaaaaabaaaaa
5csm_A_1615csm   A167177AKFQSDIPLYTHHHHT-HHHHHaaaaabaaaaa
5rub_A_4315rub   A435445RAFESFPGDADHHHHHSHHHHHaaaaabaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gcv_A_41gcv   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 32
1gcv_A_41gcv   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 33
1kic_A_1851kic   A     NOSINOSINE W - 185
1kic_A_1851kic   A     CACALCIUM ION N - 186
1kic_A_1851kic   A     NOSINOSINE N - 186
1mba_*_41mba   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 28
1vj5_A_3901vj5   A     CIUN-CYCLOHEXYL-N'-(4-IODOPHENYL)UREA L - 406
2gdm_*_52gdm   *     OXYOXYGEN MOLECULE F - 29
2gdm_*_52gdm   *     OXYOXYGEN MOLECULE F - 30
2gdm_*_52gdm   *     HEMPROTOPORPHYRIN IX CONTAINING FE V - 33

Clusters included in this Subclass
CLUSTER: HH.0.30
CLUSTER: HH.0.31
CLUSTER: HH.1.37
CLUSTER: HH.2.80