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Information on SUBCLASS 1.2.6
Subclass Accession number: 4424
Subclass: 1.2.6 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 18

Average sequence ID (%) : 14.9 +/- 16.3
Average RMSD (Å) : 0.467 +/- 0.178

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: pXpPp
(φψ)-conformation: aabaa
Pattern: [adkqrst][afilvy][afilvy]x[eknrsty][dehnqrst][CPS][adegkqrst][afilptv]x[adeknqrt]
Conservation:-0.151-0.067-0.497-0.216-0.462-0.1582.958-0.328-0.437-0.625-0.016
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1f0i_A_3141f0i   A315325DYDTVNPEESAHHHHH-HHHHHaaaaabaaaaa
1fxx_A_3271fxx   A335345KILRENPQVREHHHHH-THHHHaaaaabaaaaa
1h5y_A_1071h5y   A107117TAAVRNPQLVAHHHHH-THHHHaaaaabaaaaa
1hlb_*_341hlb   -4151RIFAYDPSAQNHHHHH-THHHHaaaaabaaaaa
1i5z_A_991i5z   A104114QLIQVNPDILMHHHHH-THHHHaaaaabwaaaa
1izo_A_2471izo   A256266LALHEHPKYKEHHHHHSTHHHHaaaaabaaaaa
1j7n_A_7491j7n   A754764KVQKNAPKTFQHHHHH-HHHHHaaaaabaaaaa
1jln_A_2721jln   A276286RDVVASSHLLQHHHHHTTTHHHaaaaabaaaaa
1ka9_F_1051ka9   F105115SAAVRRPELIRHHHHH-THHHHaaaaabaaaaa
1mbs_*_211mbs   -3141RLFKSHPETLEHHHHH-THHHHaaaaabaaaaa
1n69_A_21n69   A1626TAVRTNSTFVQHHHHH-TTHHHaaaaabaaaaa
1phn_A_481phn   A5868AVYSKFPYTSQHHHHH-THHHHaaaaabaaaaa
1q1a_A_691q1a   A7080DFFQSDPLPFYHHHHH--HHHHaaaaabaaaaa
1q9i_A_4231q9i   A424434SVRKSLCKIDKHHHHH-TTHHHaaaaabaaaaa
1qb2_A_3931qb2   A394404KVFSKQPGRIQHHHHHSTHHHHaaaaabaaaaa
1t7p_A_5451t7p   A554564KFLENTPAIAAHHHHHSTHHHHaaaaabaaaaa
1thf_D_1041thf   D104114TAAVENPSLITHHHHH-THHHHaaaaabaaaaa
2mas_A_1302mas   A134144MAARLEPRIVDHHHHH-THHHHaaaaabaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1h5y_A_1071h5y   A     PO4PHOSPHATE ION T - 107
1h5y_A_1071h5y   A     PO4PHOSPHATE ION A - 108
1hlb_*_341hlb   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 39
1hlb_*_341hlb   *     HEMPROTOPORPHYRIN IX CONTAINING FE I - 42
1hlb_*_341hlb   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 43
1hlb_*_341hlb   *     HEMPROTOPORPHYRIN IX CONTAINING FE A - 49
1hlb_*_341hlb   *     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 50
1i5z_A_991i5z   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE Y - 99
1i5z_A_991i5z   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL V - 108
1i5z_A_991i5z   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL N - 109
1i5z_A_991i5z   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE R - 123
1i5z_A_991i5z   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE L - 124
1i5z_A_991i5z   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE Q - 125
1i5z_A_991i5z   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL V - 126
1i5z_A_991i5z   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE T - 127
1i5z_A_991i5z   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE S - 128
1i5z_A_991i5z   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL E - 129
1i5z_A_991i5z   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL K - 130
1i5z_A_991i5z   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL V - 131
1i5z_A_991i5z   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL N - 133
1i5z_A_991i5z   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL L - 134
1izo_A_2471izo   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 247
1izo_A_2471izo   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 248
1izo_A_2471izo   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 250
1mbs_*_211mbs   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 32
1mbs_*_211mbs   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 33
1mbs_*_211mbs   *     HEMPROTOPORPHYRIN IX CONTAINING FE E - 38
1mbs_*_211mbs   *     HEMPROTOPORPHYRIN IX CONTAINING FE T - 39
1mbs_*_211mbs   *     HEMPROTOPORPHYRIN IX CONTAINING FE K - 42
1n69_A_21n69   A     PEHDI-STEAROYL-3-SN-PHOSPHATIDYLETHANOLAMINE V - 32
1n69_A_21n69   A     PEHDI-STEAROYL-3-SN-PHOSPHATIDYLETHANOLAMINE E - 35
1phn_A_481phn   A     CYCPHYCOCYANOBILIN V - 59
1phn_A_481phn   A     CYCPHYCOCYANOBILIN Y - 60
1phn_A_481phn   A     CYCPHYCOCYANOBILIN F - 63
1phn_A_481phn   A     CYCPHYCOCYANOBILIN T - 66
1phn_A_481phn   A     CYCPHYCOCYANOBILIN S - 67
1q9i_A_4231q9i   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 431
1q9i_A_4231q9i   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 433
1q9i_A_4231q9i   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 434
1q9i_A_4231q9i   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 435
1q9i_A_4231q9i   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 437
1q9i_A_4231q9i   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 438
1thf_D_1041thf   D     PO4PHOSPHATE ION T - 104
1thf_D_1041thf   D     PO4PHOSPHATE ION A - 105

Clusters included in this Subclass
CLUSTER: HH.2.168
CLUSTER: HH.3.23
CLUSTER: HH.4.285