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Information on SUBCLASS 1.2.9
Subclass Accession number: 2087
Subclass: 1.2.9 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 12

Average sequence ID (%) : 11.2 +/- 13.6
Average RMSD (Å) : 0.567 +/- 0.156

Consensus geometry
d (Å): 5 delta (°): 0-45 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: XXpXX
(φψ)-conformation: aabaa
Pattern: x[aekqst]x[aflvy]x[aekqs][dhknrsy][dekp][aekrt]x
Conservation:-0.818-0.020-1.1310.290-0.8080.842-0.1432.2950.053-0.560
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8i_*_7771a8i   -787796VSALYKNPREHHHHHT-HHHaaaaaabaaa
1ajs_A_3011ajs   A306315VARTLSDPELHHHHHHSHHHaaaaaabaaa
1dz4_A_2531dz4   A261270MEFLAKSPEHHHHHHT-HHHaaaaaabaaa
1ew6_A_431ew6   A4352DQELKSMAKFHHHHHH-HHHaaaaaaxaaa
1gde_A_2681gde   A274283AAKALKDERSHHHHHT-HHHaaaaaaxaaa
1gkm_A_3311gkm   A355364RISLMMDKHMHHHHH-HHHHaaaaaaxaaa
1hbn_A_3671hbn   A382391LEQYEEYPALHHHHHH-HHHaaaaaabaaa
1hdm_B_481hdm   B5463SQHLNQKDTLHHHHHT-HHHaaaaaaxaaa
1hrd_A_331hrd   A3342GPVVDAHPEYHHHHHT-HHHaaaaaabaaa
1ji1_A_5331ji1   A542551ITIRNQYPALHHHHHH-HHHaaaaaabaaa
1on2_A_1071on2   A117126VQYFEEDDARHHHHHT-HHHaaaaaabaaa
1qgr_A_8321qgr   A834843LKLVEARPMIHHHHHTSHHHaaaaaabaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dz4_A_2531dz4   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 253
1dz4_A_2531dz4   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 256
1dz4_A_2531dz4   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL P - 268
1dz4_A_2531dz4   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL E - 269
1dz4_A_2531dz4   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL R - 271
1dz4_A_2531dz4   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL Q - 272
1dz4_A_2531dz4   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL I - 275
1dz4_A_2531dz4   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL Q - 276
1ew6_A_431ew6   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 54
1ew6_A_431ew6   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 55
1ew6_A_431ew6   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 58
1ew6_A_431ew6   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 59
1ew6_A_431ew6   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 60
1ew6_A_431ew6   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 62
1ew6_A_431ew6   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 63
1ew6_A_431ew6   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 66
1hbn_A_3671hbn   A     GOLGLYCEROL Y - 380
1hbn_A_3671hbn   A     MGN2-METHYL-GLUTAMINE Y - 385
1hbn_A_3671hbn   A     MGMAGNESIUM ION Y - 385
1hbn_A_3671hbn   A     MGN2-METHYL-GLUTAMINE D - 394
1hbn_A_3671hbn   A     MGMAGNESIUM ION D - 394

Clusters included in this Subclass
CLUSTER: HH.2.62
CLUSTER: HH.3.102