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Information on SUBCLASS 1.3.17
Subclass Accession number: 4478
Subclass: 1.3.17 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 19.4 +/- 15.8
Average RMSD (Å) : 0.733 +/- 0.058

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 45-90 rho (°): 45-90
Consensus Sequence: XXcAX
(φψ)-conformation: aalaa
Pattern: [KN]xx[NQT][AQ]x[GN][A]x[EGN]x[AL]
Conservation:1.026-1.072-0.975-0.1040.133-0.5881.3962.025-0.782-0.201-0.8780.021
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1k87_A_1181k87   A134145KLRNQKNASGRAHHHTTTTHHHHHaaaaaavaaaaa
1k8k_D_641k8k   D6576KELQAHGADELLHHHHTTTHHHHHaaaaaavaaaaa
1r88_A_761r88   A7687NWVTAGNAMNTLHHHHTS-HHHHHaaaaaalaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1k87_A_1181k87   A     GOLGLYCEROL A - 121
1k87_A_1181k87   A     GOLGLYCEROL E - 122
1k87_A_1181k87   A     GOLGLYCEROL A - 124
1k87_A_1181k87   A     GOLGLYCEROL H - 125
1k87_A_1181k87   A     GOLGLYCEROL N - 140
1k87_A_1181k87   A     GOLGLYCEROL G - 143
1k87_A_1181k87   A     1PEPENTAETHYLENE GLYCOL R - 144
1k87_A_1181k87   A     LACLACTIC ACID R - 144
1k87_A_1181k87   A     GOLGLYCEROL R - 144
1k87_A_1181k87   A     GOLGLYCEROL M - 147

Clusters included in this Subclass
CLUSTER: HH.4.173