ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 10.6.1

Subclass Accession number: 9222
Subclass: 10.6.1

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 4

Average sequence ID (%) : 32.1 +/- 21.5
Average RMSD (Å) : 0.700 +/- 0.141

Consensus geometry

d (Å): 23

delta (°): 45-90

theta (°): 90-135

rho (°): 225-270

Consensus Sequence:	XphEhpFPpXhXXc
(φψ)-conformation:	aalpbbbpaappaa

Pattern:	x	x	x	[IT]	[FY]	[EKQ]	[KR]	[I]	x	[KNRS]	[AGLV]	[EK]	[FLVY]	[DRT]	[F]	[P]	[DEPS]	[FHK]	[FV]	x	[EPS]	[DGK]	[ALV]	[KR]	[D]	[L]	[ILV]	[ERS]
Conservation:	-1.152	-0.920	-0.853	-0.363	1.469	0.120	0.696	0.839	-0.754	-0.488	-1.152	0.477	-0.522	-0.790	1.901	2.432	-0.621	-0.724	0.229	-0.920	-0.518	-0.642	-0.577	0.576	1.901	0.839	0.102	-0.585

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1apm_E_243	1apm	E	243	270	PIQIYEKIVSGKVRFPSHFSSDLKDLLR	HHHHHHHHHHT-----TTS-HHHHHHHH	aaaaaaaaaavbbbbxaaxxaaaaaaaa
1fot_A_287	1fot	A	287	314	TMKTYEKILNAELRFPPFFNEDVKDLLS	HHHHHHHHHH------TTS-HHHHHHHH	aaaaaaaaaabxxbbxaaxxaaaaaaaa
1h1w_A_287	1h1w	A	287	314	EYLIFQKIIKLEYDFPEKFFPKARDLVE	HHHHHHHHHTT-----TTS-HHHHHHHH	aaaaaaaaaalxbbxxaappaaaaaaaa
1mq4_A_334	1mq4	A	334	361	YQETYKRISRVEFTFPDFVTEGARDLIS	HHHHHHHHHHT-----TTS-HHHHHHHH	aaaaaaaaaalxbbbxaaxxaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1h1w_A_287	1h1w	A	AC9GOL BINDING SITE FOR CHAIN A	L - 297
1h1w_A_287	1h1w	A	AC9GOL BINDING SITE FOR CHAIN A	Y - 299
1h1w_A_287	1h1w	A	AC9GOL BINDING SITE FOR CHAIN A	F - 301

Clusters included in this Subclass