Information on SUBCLASS 12.5.1 |
Subclass Accession number: 5140
Subclass: 12.5.1 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation EC : 2.5 (>50 %) 2.5.1 (>50 %) 2.5.1.18 GO : GO:0004364 (>50 %) GO:0016765 (>50 %) SCOP : 47615 (>75 %) 47616 (>75 %) 47617 (>75 %) |
Number of loops: 3 Average sequence ID (%) : 42.1 +/- 14.2 Average RMSD (Å) : 0.400 +/- 0.000 Consensus geometry
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Consensus Sequence: | DXXPXpXLhhhXcXhp |
(φψ)-conformation: | aabaaalabppplpaa |
Pattern: | [GN] | [PV] | [A] | [I] | [LMV] | x | [Y] | [IL] | [A] | [D] | x | x | [P] | [AD] | [RS] | [GNQ] | [L] | [AIL] | [AP] | [AP] | x | [GKN] | [AS] | [IL] | [DES] | [R] | [Y] | [HKR] | x | [IL] | [ES] | [RW] | [L] | [NS] | [FY] | [IL] | [AG] | [ST] |
Conservation: | 0.061 | -0.797 | 0.590 | 0.590 | -0.375 | -0.899 | 2.326 | 0.028 | 0.590 | 1.748 | -1.404 | -1.404 | 2.326 | -0.701 | -0.617 | -0.889 | 0.590 | -0.954 | -0.516 | -0.221 | -1.340 | -0.889 | -0.215 | 0.047 | -0.504 | 1.169 | 2.326 | -0.439 | -1.340 | 0.028 | -0.336 | 0.108 | 0.590 | 0.143 | 1.014 | 0.047 | -0.335 | -0.143 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1f2e_A_66 | 1f2e | A | 66 | 103 | NPAILLYIADQNPASGLAPAEGSLDRYRLLSRLSFLGS | HHHHHHHHHHT-TTT-SS--TT-HHHHHHHHHHHHHHH | aaaaaaaaaaabaaalabwxpvxaaaaaaaaaaaaaaa |
1n2a_A_66 | 1n2a | A | 66 | 103 | GVAIMQYLADSVPDRQLLAPVNSISRYKTIEWLNYIAT | HHHHHHHHHHT-GGG-SS--TT-HHHHHHHHHHHHHHH | aaaaaaaaaaabaaalabxxpvxaaaaaaaaaaaaaaa |
1pmt_*_66 | 1pmt | - | 66 | 103 | GVAIVQYLADLKPDRNLIAPPKALERYHQIEWLNFLAS | HHHHHHHHHTT-GGG-SS--TTSHHHHHHHHHHHHHHH | aaaaaaaaaaabaaalabbwxUxaaaaaaaaaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1f2e_A_66 | 1f2e | A | GTTGLUTATHIONE | N - 66 |
1f2e_A_66 | 1f2e | A | GTTGLUTATHIONE | P - 67 |
1f2e_A_66 | 1f2e | A | GTTGLUTATHIONE | S - 99 |
1f2e_A_66 | 1f2e | A | GTTGLUTATHIONE | F - 100 |
1f2e_A_66 | 1f2e | A | GTTGLUTATHIONE | G - 102 |
1f2e_A_66 | 1f2e | A | GTTGLUTATHIONE | S - 103 |
1n2a_A_66 | 1n2a | A | GTSGLUTATHIONE SULFONIC ACID | G - 66 |
1n2a_A_66 | 1n2a | A | GTSGLUTATHIONE SULFONIC ACID | V - 67 |
1n2a_A_66 | 1n2a | A | GTSGLUTATHIONE SULFONIC ACID | N - 99 |
1n2a_A_66 | 1n2a | A | GTSGLUTATHIONE SULFONIC ACID | Y - 100 |
1n2a_A_66 | 1n2a | A | GTSGLUTATHIONE SULFONIC ACID | A - 102 |
1n2a_A_66 | 1n2a | A | GTSGLUTATHIONE SULFONIC ACID | T - 103 |
1n2a_A_66 | 1n2a | A | GTSGLUTATHIONE SULFONIC ACID | E - 104 |
1pmt_*_66 | 1pmt | * | GTTGLUTATHIONE | G - 66 |
1pmt_*_66 | 1pmt | * | GTTGLUTATHIONE | V - 67 |
1pmt_*_66 | 1pmt | * | GTTGLUTATHIONE | A - 102 |
Clusters included in this Subclass |
CLUSTER: HH.13.31 |