Information on SUBCLASS 2.1.39 |
Subclass Accession number: 4539
Subclass: 2.1.39 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 13.0 +/- 13.3 Average RMSD (Å) : 0.725 +/- 0.330 Consensus geometry
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Consensus Sequence: | XXhcXX |
(φψ)-conformation: | aappaa |
Pattern: | [IKTV] | [ER] | [ALVY] | x | [ASTV] | x | [AILV] | x | x | [AR] | [FLV] | [DN] | x | x | x | [FIM] | [AGVY] | [HN] |
Conservation: | -0.493 | 1.025 | -0.443 | -0.914 | -0.139 | -1.050 | 0.215 | -1.202 | 0.218 | 0.411 | 0.454 | 1.834 | -0.696 | -0.797 | -0.555 | 0.568 | -0.847 | 2.410 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1jet_A_287 | 1jet | A | 287 | 304 | VRVRTALKLALDRDIIVN | HHHHHHHHHHS-HHHHHH | aaaaaaaaaaxxaaaaaa |
1mkm_A_63 | 1mkm | A | 65 | 82 | IEYGSFVLRRFNIRDIAH | HHHHHHHHHH--HHHHHH | aaaaaaaaaaxbaaaaaa |
1rh1_A_386 | 1rh1 | A | 389 | 406 | KEAIVNAWKAFNAEDMGN | HHHHHHHHHH--HHHHHH | aaaaaaaaaapxaaaaaa |
3lyn_A_82 | 3lyn | A | 86 | 103 | TRLGAEIGRRVDMVFFYN | HHHHHHHHHHS-HHHHHH | aaaaaaaaaaxxaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1mkm_A_63 | 1mkm | A | FMTFORMIC ACID | L - 64 |
1mkm_A_63 | 1mkm | A | FMTFORMIC ACID | I - 65 |
1mkm_A_63 | 1mkm | A | FMTFORMIC ACID | Y - 67 |
1mkm_A_63 | 1mkm | A | FMTFORMIC ACID | G - 68 |
1mkm_A_63 | 1mkm | A | FMTFORMIC ACID | S - 69 |
1mkm_A_63 | 1mkm | A | FMTFORMIC ACID | L - 72 |
Clusters included in this Subclass |
CLUSTER: HH.3.144 |