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Information on SUBCLASS 2.2.2
Subclass Accession number: 4563
Subclass: 2.2.2 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 40

Average sequence ID (%) : 13.4 +/- 15.2
Average RMSD (Å) : 0.510 +/- 0.239

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXXpXp
(φψ)-conformation: aalpaa
Pattern: x[aflmvy]x[adegknqrs]x[degknqr][adeknrt]x[adegknqrt]x[afgilmvwy]x
Conservation:-0.1700.899-0.852-0.359-0.2531.4921.675-1.3100.461-1.1130.448-0.918
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8h_*_3871a8h   -393404PLVRELKFHVALHHHHTT-HHHHHaaaaavbaaaaa
1d2z_A_981d2z   A104115LFKKLKLHNAMRHHHHTT-HHHHHaaaaalxaaaaa
1dys_A_151dys   A2738AFLSRGDQTNAAHHHTTT-HHHHHaaaaavxaaaaa
1eex_G_831eex   G92103IAKDAGRDRLAMHHHHTT-HHHHHaaaaavbaaaaa
1fjh_A_1281fjh   A129140LALEAGEEAKARHHHHHT-HHHHHaaaaavxaaaaa
1fq0_A_1891fq0   A190201DALEAGDYDRITHHHHHT-HHHHHaaaaavxaaaaa
1g8k_A_5631g8k   A577588MYQKDGKAEMAAHHHHTT-HHHHHaaaaavbaaaaa
1gc5_A_3061gc5   A312323IMEIIGDEELAKHHHHTT-HHHHHaaaaavxaaaaa
1h2s_B_241h2s   B4657AAAATGDAAAVQHHHHHT-HHHHHaaaaagxaaaaa
1h6g_A_3981h6g   A406417EAAKNGNEKEVKHHHHTT-HHHHHaaaaalbaaaaa
1h6k_A_981h6k   A114125ESLKANNYNEAVHHHHTT-HHHHHaaaaalxaaaaa
1hcu_A_3931hcu   A401412AYRVTGDSKWQDHHHHH-BHHHHHaaaaavxaaaaa
1hw1_A_1831hw1   A198209ALCSEGAHDQVYHHHHHT-SHHHHaaaaavxaaaaa
1ile_*_6751ile   -693704EALEAYDPTTSAHHHHTT-HHHHHaaaaalbaaaaa
1iq0_A_5121iq0   A518529EAAEERTPHVLAHHHHHT-HHHHHaaaaalbaaaaa
1j6r_A_971j6r   A105116EYFRKGEDLLAFHHHHTT-HHHHHaaaaavxaaaaa
1jcl_A_1071jcl   A108119RALMAGNEQVGFHHHHTT--HHHHaaaaavbaaaaa
1l2l_A_2961l2l   A302313VVSVMGEKELAEHHHHTT-HHHHHaaaaavxaaaaa
1lf6_A_3421lf6   A351362AFIAAGDVDSANHHHHHT-HHHHHaaaaavxaaaaa
1msk_*_10691msk   -10751086AFEAQHDDYNKIHHHHTT-HHHHHaaaaalxaaaaa
1mzh_A_1931mzh   A194205SAFKSEKYDFVVHHHHTT-HHHHHaaaaavxaaaaa
1ntf_A_1801ntf   A185196SLVDQNNIDGLMHHHHTT-HHHHHaaaaalxaaaaa
1nze_A_631nze   A6475QFIDRKAWPSLQHHHHTT-HHHHHaaaaalxaaaaa
1o7n_B_5281o7n   B543554HLLDIQAYRAWLHHHHTT-HHHHHaaaaavxaaaaa
1obb_A_4191obb   A431442EAFLTGDIRIIKHHHHH--HHHHHaaaaavxaaaaa
1ogl_A_1531ogl   A165176QLASIYRFDLITHHHHTT-HHHHHaaaaalxaaaaa
1oh0_A_61oh0   A1829ELVDVGDIEAIVHHHHHT-HHHHHaaaaavxaaaaa
1or7_A_21or7   A1223ERVQKGDQKAFNHHHHTT-HHHHHaaaaagxaaaaa
1pfv_A_4251pfv   A430441EAWESREFGKAVHHHHTT-HHHHHaaaaavxaaaaa
1pl4_A_301pl4   A4758EALAKGDVTAQIHHHHTT-HHHHHaaaaalxaaaaa
1ua4_A_2931ua4   A299310IMEILGEKKLAKHHHHTT-HHHHHaaaaavxaaaaa
1ub3_A_941ub3   A95106GRAKAGDLDYLEHHHHTT-HHHHHaaaaavxaaaaa
1ut9_A_6801ut9   A694705AYDFTGDSKYLDHHHHH--THHHHaaaaavxaaaaa
1vjt_A_4181vjt   A421432EAYISRDRKVLEHHHHHT-HHHHHaaaaalbaaaaa
1vlt_A_1211vlt   A139150QFLDNGNMDAYFHHHHTT-HHHHHaaaaavxaaaaa
1whi_*_1051whi   -105116ELRDKDFMKIISHHHHTT-HHHHHaaaaavxaaaaa
256b_A_56256b   A7788KLANEGKVKEAQHHHHTT-HHHHHaaaaavxaaaaa
2asr_*_1172asr   -139150DYLDYGNTGAYFHHHTTT-HHHHHaaaaavxaaaaa
3fap_B_1123fap   B126137LYFGERNVKGMFHHHTT--HHHHHaaaaalbaaaaa
5csm_A_1735csm   A178189KLIKSKDVEGIMHHHHTT-HHHHHaaaaalxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1g8k_A_5631g8k   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE D - 563
1gc5_A_3061gc5   A     ADPADENOSINE-5'-DIPHOSPHATE E - 308
1h6g_A_3981h6g   A     MSESELENOMETHIONINE L - 401
1h6g_A_3981h6g   A     MSESELENOMETHIONINE L - 404
1h6g_A_3981h6g   A     MSESELENOMETHIONINE I - 405
1h6g_A_3981h6g   A     CACALCIUM ION I - 405
1h6g_A_3981h6g   A     MSESELENOMETHIONINE A - 408
1hcu_A_3931hcu   A     CACALCIUM ION E - 393
1hcu_A_3931hcu   A     CACALCIUM ION E - 396
1msk_*_10691msk   *     SAMS-ADENOSYLMETHIONINE R - 1094
1msk_*_10691msk   *     SAMS-ADENOSYLMETHIONINE E - 1097
1msk_*_10691msk   *     SAMS-ADENOSYLMETHIONINE A - 1098
1msk_*_10691msk   *     SAMS-ADENOSYLMETHIONINE E - 1101
1msk_*_10691msk   *     ACTACETATE ION Y - 1102
1msk_*_10691msk   *     ACTACETATE ION L - 1103
1msk_*_10691msk   *     ACTACETATE ION R - 1106
1o7n_B_5281o7n   B     EDO1,2-ETHANEDIOL Y - 550
1oh0_A_61oh0   A     EQUEQUILENIN Y - 16
1oh0_A_61oh0   A     EQUEQUILENIN I - 17
1oh0_A_61oh0   A     EQUEQUILENIN V - 20
1pl4_A_301pl4   A     MNMANGANESE (II) ION H - 30
1pl4_A_301pl4   A     MNMANGANESE (II) ION Y - 34
1ua4_A_2931ua4   A     AMPADENOSINE MONOPHOSPHATE E - 293
1ua4_A_2931ua4   A     AMPADENOSINE MONOPHOSPHATE E - 295
1vjt_A_4181vjt   A     MSESELENOMETHIONINE W - 418
1vjt_A_4181vjt   A     MSESELENOMETHIONINE N - 419
1vjt_A_4181vjt   A     MSESELENOMETHIONINE L - 420
1vjt_A_4181vjt   A     MSESELENOMETHIONINE E - 421
1vjt_A_4181vjt   A     MSESELENOMETHIONINE Y - 423
1vjt_A_4181vjt   A     MSESELENOMETHIONINE I - 424
256b_A_56256b   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 60
256b_A_56256b   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 61
256b_A_56256b   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 62
256b_A_56256b   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 63
256b_A_56256b   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 64
256b_A_56256b   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 65
256b_A_56256b   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 68
3fap_B_1123fap   B     ARDC15-(R)-METHYLTHIENYL RAPAMYCIN H - 117
3fap_B_1123fap   B     ARDC15-(R)-METHYLTHIENYL RAPAMYCIN L - 120
3fap_B_1123fap   B     ARDC15-(R)-METHYLTHIENYL RAPAMYCIN E - 121
3fap_B_1123fap   B     ARDC15-(R)-METHYLTHIENYL RAPAMYCIN S - 124
3fap_B_1123fap   B     ARDC15-(R)-METHYLTHIENYL RAPAMYCIN R - 125
3fap_B_1123fap   B     ARDC15-(R)-METHYLTHIENYL RAPAMYCIN F - 128
3fap_B_1123fap   B     ARDC15-(R)-METHYLTHIENYL RAPAMYCIN G - 129
3fap_B_1123fap   B     ARDC15-(R)-METHYLTHIENYL RAPAMYCIN E - 130
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1oh0_A_61oh0   A AC1EQU BINDING SITE FOR CHAIN AY - 16
1whi_*_1051whi   * R2A SECOND SITE IS PROPOSED TO INTERACT WITH 23S RRNA. IT IS LOCATED BETWEEN THE BETA BARREL AND THE C TERMINAL HELICAL DOMAIN.K - 113
1whi_*_1051whi   * R2A SECOND SITE IS PROPOSED TO INTERACT WITH 23S RRNA. IT IS LOCATED BETWEEN THE BETA BARREL AND THE C TERMINAL HELICAL DOMAIN.S - 116
1whi_*_1051whi   * R2A SECOND SITE IS PROPOSED TO INTERACT WITH 23S RRNA. IT IS LOCATED BETWEEN THE BETA BARREL AND THE C TERMINAL HELICAL DOMAIN.L - 117

Clusters included in this Subclass
CLUSTER: HH.1.70
CLUSTER: HH.2.32
CLUSTER: HH.3.18
CLUSTER: HH.4.17