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Information on SUBCLASS 2.2.4
Subclass Accession number: 4565
Subclass: 2.2.4 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 28

Average sequence ID (%) : 14.4 +/- 17.7
Average RMSD (Å) : 0.625 +/- 0.127

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: XXXpXX
(φψ)-conformation: aalpaa
Pattern: xx[acilmvy]xx[degknr][dehknsty][aegnpqs]x[agilvw][ckltv]x
Conservation:-1.048-0.6911.603-0.688-0.0920.8081.3200.918-1.0690.652-0.633-1.079
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ak2_*_471ak2   -5364AMVASGSELGKKHHHHHT-HHHHHaaaaavxaaaaa
1aky_*_351aky   -4152SQIAKGTQLGLEHHHHTT-HHHHHaaaaavxaaaaa
1aoa_*_2161aoa   -217228EDLRAGKPHLVLHHHHTT-HHHHHaaaaavxaaaaa
1aoa_*_3551aoa   -356367ADVVSGNPKLNLHHHHTT-HHHHHaaaaavpaaaaa
1e3d_B_3781e3d   B384395VAYGHNHKTIKPHHHHTT-TTHHHaaaaalpaaaaa
1e4y_A_311e4y   A3748AAVKSGSELGKQHHHTTT-HHHHHaaaaavxaaaaa
1efc_A_1741efc   A175186LKALEGDAEWEAHHHHTT-HHHHHaaaaagxaaaaa
1esw_A_1611esw   A161172LPLRKREEKALRHHHHTT-HHHHHaaaaalxaaaaa
1ezv_C_1111ezv   C131142GYCCVYGQMSHWHHHHT-BHHHHHaaaaalxaaaaa
1f0j_A_2831f0j   A285296FLINTNSELALMHHHHTT-HHHHHaaaaavpaaaaa
1g99_A_2841g99   A289300EAASKGNRKAELHHHHTT-HHHHHaaaaavxaaaaa
1gc5_A_3191gc5   A323334KEVLEGHIFSVIHHHHTT-HHHHHaaaaavxaaaaa
1gs9_A_251gs9   A3849RWVQTLSEQVQEHHHHH--HHHHHaaaaalxaaaaa
1gx5_A_1051gx5   A106117KDVRNLSSKAVNHHHHTT-HHHHHaaaaalxaaaaa
1klx_A_771klx   A8697KACGLNDQDGCLHHHHTT-HHHHHaaaaavxaaaaa
1l5j_A_1281l5j   A134145EKAKAGNEYAKQHHHHTT-HHHHHaaaaagxaaaaa
1mb8_A_1491mb8   A150161DDIADGNPKLTLHHHHTT-HHHHHaaaaavpaaaaa
1nst_A_7061nst   A716727HQRAHDDPVALKHHHHTT-HHHHHaaaaalxaaaaa
1ouv_A_2251ouv   A234245KACELENGGGCFHHHHTT-HHHHHaaaaavxaaaaa
1ouv_A_451ouv   A5465KACDLKENSGCFHHHHTT-HHHHHaaaaavxaaaaa
1ouv_A_811ouv   A90101KACDLNYSNGCHHHHHTT-HHHHHaaaaavxaaaaa
1p3j_A_311p3j   A3748AAMKEETPLGLEHHHHTT-HHHHHaaaaavxaaaaa
1s3g_A_311s3g   A3748AAIQEGTELGVKHHHHHT-HHHHHaaaaavpaaaaa
1so2_A_8301so2   A832843FLVATNAPQAVLHHHHTT-HHHHHaaaaalpaaaaa
1ubl_L_3871ubl   L393404IAYSQGHPKVKAHHHHTT-HHHHHaaaaavpaaaaa
1zin_*_311zin   -3748AAMKEGTPLGLQHHHHHT-HHHHHaaaaavxaaaaa
2ak3_A_362ak3   A4253DNMLRGTEIGVLHHHHTT-HHHHHaaaaalxaaaaa
3adk_*_393adk   -4556AEVSSGSARGKMHHHHHT-HHHHHaaaaagxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aky_*_351aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE T - 35
1aky_*_351aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE G - 36
1aky_*_351aky   *     IMDIMIDAZOLE G - 36
1aky_*_351aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE D - 37
1aky_*_351aky   *     IMDIMIDAZOLE D - 37
1aky_*_351aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE L - 39
1aky_*_351aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE R - 40
1aky_*_351aky   *     IMDIMIDAZOLE R - 40
1aky_*_351aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE A - 53
1aky_*_351aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE I - 56
1aky_*_351aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE M - 57
1aky_*_351aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE D - 58
1e4y_A_311e4y   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE T - 31
1e4y_A_311e4y   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE G - 32
1e4y_A_311e4y   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE D - 33
1e4y_A_311e4y   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE L - 35
1e4y_A_311e4y   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE R - 36
1e4y_A_311e4y   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE A - 49
1e4y_A_311e4y   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE I - 52
1e4y_A_311e4y   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE M - 53
1efc_A_1741efc   A     GDPGUANOSINE-5'-DIPHOSPHATE A - 174
1efc_A_1741efc   A     GDPGUANOSINE-5'-DIPHOSPHATE L - 175
1efc_A_1741efc   A     GDPGUANOSINE-5'-DIPHOSPHATE K - 176
1ezv_C_1111ezv   C     HEMPROTOPORPHYRIN IX CONTAINING FE L - 113
1ezv_C_1111ezv   C     HEMPROTOPORPHYRIN IX CONTAINING FE W - 114
1ezv_C_1111ezv   C     HEMPROTOPORPHYRIN IX CONTAINING FE V - 116
1ezv_C_1111ezv   C     HEMPROTOPORPHYRIN IX CONTAINING FE G - 117
1ezv_C_1111ezv   C     HEMPROTOPORPHYRIN IX CONTAINING FE V - 118
1ezv_C_1111ezv   C     HEMPROTOPORPHYRIN IX CONTAINING FE I - 120
1ezv_C_1111ezv   C     HEMPROTOPORPHYRIN IX CONTAINING FE F - 121
1ezv_C_1111ezv   C     SMASTIGMATELLIN A T - 122
1ezv_C_1111ezv   C     SMASTIGMATELLIN A L - 123
1ezv_C_1111ezv   C     HEMPROTOPORPHYRIN IX CONTAINING FE T - 124
1ezv_C_1111ezv   C     SMASTIGMATELLIN A I - 125
1ezv_C_1111ezv   C     SMASTIGMATELLIN A A - 126
1ezv_C_1111ezv   C     HEMPROTOPORPHYRIN IX CONTAINING FE T - 127
1ezv_C_1111ezv   C     HEMPROTOPORPHYRIN IX CONTAINING FE A - 128
1ezv_C_1111ezv   C     HEMPROTOPORPHYRIN IX CONTAINING FE F - 129
1ezv_C_1111ezv   C     SMASTIGMATELLIN A F - 129
1ezv_C_1111ezv   C     HEMPROTOPORPHYRIN IX CONTAINING FE L - 130
1ezv_C_1111ezv   C     SMASTIGMATELLIN A L - 130
1ezv_C_1111ezv   C     HEMPROTOPORPHYRIN IX CONTAINING FE G - 131
1ezv_C_1111ezv   C     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 132
1ezv_C_1111ezv   C     SMASTIGMATELLIN A Y - 132
1ezv_C_1111ezv   C     HEMPROTOPORPHYRIN IX CONTAINING FE C - 133
1ezv_C_1111ezv   C     HEMPROTOPORPHYRIN IX CONTAINING FE C - 134
1ezv_C_1111ezv   C     HEMPROTOPORPHYRIN IX CONTAINING FE V - 135
1ezv_C_1111ezv   C     SMASTIGMATELLIN A M - 139
1ezv_C_1111ezv   C     SMASTIGMATELLIN A S - 140
1ezv_C_1111ezv   C     SMASTIGMATELLIN A W - 142
1ezv_C_1111ezv   C     SMASTIGMATELLIN A G - 143
1ezv_C_1111ezv   C     SMASTIGMATELLIN A V - 146
1ezv_C_1111ezv   C     SMASTIGMATELLIN A I - 147
1ezv_C_1111ezv   C     SMASTIGMATELLIN A T - 148
1g99_A_2841g99   A     ADPADENOSINE-5'-DIPHOSPHATE F - 284
1g99_A_2841g99   A     ADPADENOSINE-5'-DIPHOSPHATE R - 285
1g99_A_2841g99   A     ADPADENOSINE-5'-DIPHOSPHATE D - 286
1g99_A_2841g99   A     ADPADENOSINE-5'-DIPHOSPHATE D - 288
1gx5_A_1051gx5   A     MSESELENOMETHIONINE I - 119
1gx5_A_1051gx5   A     MSESELENOMETHIONINE W - 123
1nst_A_7061nst   A     A3PADENOSINE-3'-5'-DIPHOSPHATE D - 708
1nst_A_7061nst   A     A3PADENOSINE-3'-5'-DIPHOSPHATE Y - 711
1nst_A_7061nst   A     A3PADENOSINE-3'-5'-DIPHOSPHATE S - 712
1nst_A_7061nst   A     A3PADENOSINE-3'-5'-DIPHOSPHATE W - 713
1nst_A_7061nst   A     A3PADENOSINE-3'-5'-DIPHOSPHATE Q - 715
1nst_A_7061nst   A     A3PADENOSINE-3'-5'-DIPHOSPHATE H - 716
1p3j_A_311p3j   A     MGMAGNESIUM ION D - 33
1p3j_A_311p3j   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE F - 35
1p3j_A_311p3j   A     MGMAGNESIUM ION R - 36
1p3j_A_311p3j   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE Y - 52
1p3j_A_311p3j   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE I - 53
1p3j_A_311p3j   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE D - 54
1s3g_A_311s3g   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE F - 52
1so2_A_8301so2   A     6666-(4-{[2-(3-IODOBENZYL)-3-OXOCYCLOHEX-1-EN-1-YL]AMINO} PHENYL)-5-METHYL-4,5-DIHYDROPYRIDAZIN-3(2H)-ONE N - 830
1ubl_L_3871ubl   L     MPD2-METHYL-2,4-PENTANEDIOL L - 392
1ubl_L_3871ubl   L     MPD2-METHYL-2,4-PENTANEDIOL I - 393
1ubl_L_3871ubl   L     MPD2-METHYL-2,4-PENTANEDIOL Y - 395
1ubl_L_3871ubl   L     MPD2-METHYL-2,4-PENTANEDIOL S - 396
1ubl_L_3871ubl   L     MPD2-METHYL-2,4-PENTANEDIOL T - 406
1ubl_L_3871ubl   L     MPD2-METHYL-2,4-PENTANEDIOL D - 407
1ubl_L_3871ubl   L     MPD2-METHYL-2,4-PENTANEDIOL L - 410
2ak3_A_362ak3   A     AMPADENOSINE MONOPHOSPHATE S - 36
2ak3_A_362ak3   A     AMPADENOSINE MONOPHOSPHATE G - 37
2ak3_A_362ak3   A     AMPADENOSINE MONOPHOSPHATE D - 38
2ak3_A_362ak3   A     AMPADENOSINE MONOPHOSPHATE L - 40
2ak3_A_362ak3   A     AMPADENOSINE MONOPHOSPHATE R - 41
2ak3_A_362ak3   A     AMPADENOSINE MONOPHOSPHATE F - 57
2ak3_A_362ak3   A     AMPADENOSINE MONOPHOSPHATE I - 58
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e4y_A_311e4y   A AC1AP5 BINDING SITE FOR CHAIN AT - 31
1e4y_A_311e4y   A AC1AP5 BINDING SITE FOR CHAIN AG - 32
1e4y_A_311e4y   A AC1AP5 BINDING SITE FOR CHAIN AR - 36

Clusters included in this Subclass
CLUSTER: HH.2.158
CLUSTER: HH.2.205
CLUSTER: HH.2.55
CLUSTER: HH.3.41
CLUSTER: HH.4.28