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Information on SUBCLASS 2.5.2
Subclass Accession number: 4615
Subclass: 2.5.2 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 11

Average sequence ID (%) : 43.4 +/- 30.0
Average RMSD (Å) : 0.391 +/- 0.263

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: hXGcXX
(φψ)-conformation: aalbaa
Pattern: [FIY][ELM][ER][ALMY][AIV][nst][EY][ACGS][AILMV][filv][aiv][GR][DGT][APSTV][gst][IPV][ILM][ADE][DEQ]x
Conservation:1.002-0.4281.383-0.8820.792-0.5151.747-0.457-0.162-1.090-1.1751.178-0.379-1.134-0.992-0.5231.0920.4331.263-1.152
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1all_A_781all   A91110YLRLITYGIVAGDVTPIEEIHHHHHHHHHHHTSSHHHHHHaaaaaaaaaaavbaaaaaaa
1all_B_781all   B91110YLRYATYAMLAGDPSILDERHHHHHHHHHHHT-SHHHHHHaaaaaaaaaaavbaaaaaaa
1cpc_B_781cpc   B91110ILRYVTYAIFAGDASVLDDRHHHHHHHHHHHTSTHHHHHHaaaaaaaaaaavbaaaaaaa
1eyx_A_761eyx   A89108YMRLVNYSLVIGGTGPLDEWHHHHHHHHHHHTSSHHHHHHaaaaaaaaaaavbaaaaaaa
1gh0_B_761gh0   B89108ILRYVTYAVFAGDASVLEDRHHHHHHHHHHHT-SHHHHHHaaaaaaaaaaavbaaaaaaa
1iq0_A_5121iq0   A512531FEEAVLEAAEERTPHVLAQYHHHHHHHHHHHT-HHHHHHHaaaaaaaaaaalbaaaaaaa
1jbo_A_781jbo   A91110YLRMVTYCLVAGGTGPMDEYHHHHHHHHHHHTSSHHHHHHaaaaaaaaaaavbaaaaaaa
1jbo_B_781jbo   B91110ILRYVTYAILAGDSSVLDDRHHHHHHHHHHHTSSHHHHHHaaaaaaaaaaavbaaaaaaa
1kn1_A_801kn1   A91110YLRLVTYGIVSGDVTPIEEIHHHHHHHHHHHT-SHHHHHHaaaaaaaaaaavbaaaaaaa
1phn_A_781phn   A91110YLRMVTYCLVVGGTGPMDEYHHHHHHHHHHHTSSHHHHHHaaaaaaaaaaavbaaaaaaa
1phn_B_781phn   B91110ILRYVSYAIIAGDSSILDDRHHHHHHHHHHHTSTHHHHHHaaaaaaaaaaavbaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1all_B_781all   B     CYCPHYCOCYANOBILIN R - 79
1all_A_781all   A     CYCPHYCOCYANOBILIN M - 80
1all_B_781all   B     CYCPHYCOCYANOBILIN R - 80
1all_A_781all   A     CYCPHYCOCYANOBILIN T - 81
1all_B_781all   B     CYCPHYCOCYANOBILIN Y - 81
1all_A_781all   A     CYCPHYCOCYANOBILIN T - 83
1all_B_781all   B     CYCPHYCOCYANOBILIN A - 83
1all_A_781all   A     CYCPHYCOCYANOBILIN C - 84
1all_A_781all   A     CYCPHYCOCYANOBILIN L - 85
1all_B_781all   B     CYCPHYCOCYANOBILIN I - 85
1all_A_781all   A     CYCPHYCOCYANOBILIN R - 86
1all_A_781all   A     CYCPHYCOCYANOBILIN D - 87
1all_A_781all   A     CYCPHYCOCYANOBILIN L - 88
1all_A_781all   A     CYCPHYCOCYANOBILIN Y - 90
1all_A_781all   A     CYCPHYCOCYANOBILIN Y - 91
1all_A_781all   A     CYCPHYCOCYANOBILIN R - 93
1all_A_781all   A     CYCPHYCOCYANOBILIN L - 94
1all_B_781all   B     CYCPHYCOCYANOBILIN Y - 94
1all_A_781all   A     CYCPHYCOCYANOBILIN I - 110
1all_B_781all   B     CYCPHYCOCYANOBILIN R - 110
1all_A_781all   A     CYCPHYCOCYANOBILIN G - 111
1cpc_B_781cpc   B     NMAN-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-2-METHYLALANINE R - 80
1cpc_B_781cpc   B     CYCPHYCOCYANOBILIN M - 81
1cpc_B_781cpc   B     CYCPHYCOCYANOBILIN M - 88
1cpc_B_781cpc   B     CYCPHYCOCYANOBILIN I - 90
1cpc_B_781cpc   B     CYCPHYCOCYANOBILIN I - 91
1eyx_A_761eyx   A     CYCPHYCOCYANOBILIN E - 77
1eyx_A_761eyx   A     CYCPHYCOCYANOBILIN K - 78
1eyx_A_761eyx   A     CYCPHYCOCYANOBILIN I - 79
1eyx_A_761eyx   A     CYCPHYCOCYANOBILIN K - 81
1eyx_A_761eyx   A     CYCPHYCOCYANOBILIN C - 82
1eyx_A_761eyx   A     CYCPHYCOCYANOBILIN Y - 83
1eyx_A_761eyx   A     CYCPHYCOCYANOBILIN R - 84
1eyx_A_761eyx   A     CYCPHYCOCYANOBILIN D - 85
1eyx_A_761eyx   A     CYCPHYCOCYANOBILIN I - 86
1eyx_A_761eyx   A     CYCPHYCOCYANOBILIN H - 88
1eyx_A_761eyx   A     CYCPHYCOCYANOBILIN Y - 89
1eyx_A_761eyx   A     CYCPHYCOCYANOBILIN M - 90
1eyx_A_761eyx   A     CYCPHYCOCYANOBILIN R - 91
1eyx_A_761eyx   A     CYCPHYCOCYANOBILIN L - 92
1eyx_A_761eyx   A     CYCPHYCOCYANOBILIN W - 108
1gh0_B_761gh0   B     CYCPHYCOCYANOBILIN S - 76
1gh0_B_761gh0   B     CYCPHYCOCYANOBILIN R - 77
1gh0_B_761gh0   B     MENN-METHYL ASPARAGINE R - 78
1gh0_B_761gh0   B     CYCPHYCOCYANOBILIN R - 78
1gh0_B_761gh0   B     MENN-METHYL ASPARAGINE M - 79
1gh0_B_761gh0   B     CYCPHYCOCYANOBILIN M - 79
1gh0_B_761gh0   B     CYCPHYCOCYANOBILIN A - 81
1gh0_B_761gh0   B     MENN-METHYL ASPARAGINE C - 82
1gh0_B_761gh0   B     CYCPHYCOCYANOBILIN L - 83
1gh0_B_761gh0   B     CYCPHYCOCYANOBILIN M - 86
1gh0_B_761gh0   B     CYCPHYCOCYANOBILIN I - 88
1gh0_B_761gh0   B     CYCPHYCOCYANOBILIN I - 89
1gh0_B_761gh0   B     CYCPHYCOCYANOBILIN Y - 92
1gh0_B_761gh0   B     CYCPHYCOCYANOBILIN R - 108
1jbo_A_781jbo   A     CYCPHYCOCYANOBILIN E - 79
1jbo_A_781jbo   A     CYCPHYCOCYANOBILIN G - 80
1jbo_B_781jbo   B     MENN-METHYL ASPARAGINE R - 80
1jbo_B_781jbo   B     MENN-METHYL ASPARAGINE M - 81
1jbo_A_781jbo   A     CYCPHYCOCYANOBILIN K - 83
1jbo_A_781jbo   A     CYCPHYCOCYANOBILIN A - 85
1jbo_A_781jbo   A     CYCPHYCOCYANOBILIN M - 94
1jbo_A_781jbo   A     CYCPHYCOCYANOBILIN Y - 110
1phn_A_781phn   A     CYCPHYCOCYANOBILIN V - 79
1phn_B_781phn   B     MENN-METHYL ASPARAGINE C - 84
1phn_B_781phn   B     CYCPHYCOCYANOBILIN C - 111

Clusters included in this Subclass
CLUSTER: HH.2.75