Logo
Information on SUBCLASS 2.5.4
Subclass Accession number: 4617
Subclass: 2.5.4 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 19.3 +/- 18.5
Average RMSD (Å) : 0.933 +/- 0.121

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: ppXDpp
(φψ)-conformation: aalbaa
Pattern: x[ADER][AIKLV][IKLM][aem][aegk][ALY][gqrs][dey][krt][AEGK][D][hkst][GRST][alv][ikl][enps][KLV][il][CDEKS]
Conservation:-0.728-0.036-0.4030.240-0.339-0.656-0.086-0.7330.0800.0920.0854.000-0.5330.133-0.183-0.487-0.533-0.0890.445-0.268
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bsm_A_311bsm   A4362LDKLAEARDKADFGAINKLEHHHHHHHHHHT--TTHHHHHaaaaaaaaaavbaaaaaaaa
1ids_A_321ids   A4463VAKLEEARAKEDHSAILLNEHHHHHHHHHTT--TTHHHHHaaaaaaaaaalbaaaaaaaa
1l1y_A_4411l1y   A448467QRVMEYYLETGDSSVKNLIKHHHHHHHHHH--GGGHHHHHaaaaaaaaaavpaaaaaaaa
1oyz_A_2061oyz   A210229IEAIIGLSYRKDKRVLSVLCHHHHHHHHHTT-GGGHHHHHaaaaaaaaaalxaaaaaaaa
1oyz_A_2391oyz   A239258DDIIEAAGELGDKTLLPVLDHHHHHHHHHH--GGGHHHHHaaaaaaaaaavbaaaaaaaa
1vf6_A_131vf6   A1736DRLKMKLQEKGDTSQNEKLSHHHHHHHHHHT--TTHHHHHaaaaaaaaaavbaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bsm_A_311bsm   A     FEFE (III) ION H - 31
1bsm_A_311bsm   A     FEFE (III) ION Y - 35
1bsm_A_311bsm   A     FEFE (III) ION H - 75
1ids_A_321ids   A     FEFE (III) ION H - 32
1ids_A_321ids   A     FEFE (III) ION Y - 36
1ids_A_321ids   A     FEFE (III) ION H - 76
1l1y_A_4411l1y   A     BGCBETA-D-GLUCOSE F - 442
1l1y_A_4411l1y   A     BGCBETA-D-GLUCOSE W - 445
1oyz_A_2061oyz   A     MSESELENOMETHIONINE V - 208
1oyz_A_2061oyz   A     MSESELENOMETHIONINE R - 209
1oyz_A_2061oyz   A     MSESELENOMETHIONINE A - 212
1oyz_A_2061oyz   A     MSESELENOMETHIONINE L - 232
1oyz_A_2391oyz   A     MSESELENOMETHIONINE I - 242
1oyz_A_2391oyz   A     MSESELENOMETHIONINE L - 253
1oyz_A_2391oyz   A     MSESELENOMETHIONINE P - 255
1oyz_A_2391oyz   A     MSESELENOMETHIONINE V - 256
1oyz_A_2391oyz   A     MSESELENOMETHIONINE L - 257
1oyz_A_2391oyz   A     MSESELENOMETHIONINE D - 258
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1bsm_A_311bsm   A FEAFERRIC IRON A HEXA COORDINATED SUBSTRATE BINDING SITE BLOCKED BY A SOLVENT MOLECULEH - 75

Clusters included in this Subclass
CLUSTER: HH.4.300
CLUSTER: HH.5.84
CLUSTER: HH.6.50