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Information on SUBCLASS 3.3.4
Subclass Accession number: 4683
Subclass: 3.3.4 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 8.5 +/- 16.8
Average RMSD (Å) : 0.888 +/- 0.203

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XpXXpXp
(φψ)-conformation: aapapaa
Pattern: x[aglpt]xx[adnrst][ALMVY]x[degnt][aiklt][AEPQST][denrt]x[hknrsy][filtv]x[aer]x[almtv][aglpt]
Conservation:-1.873-1.309-0.097-0.455-0.8332.2530.5290.819-0.7401.5070.573-0.273-0.204-0.300-0.2780.7690.1240.838-1.049
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b3u_A_5211b3u   A522540PTVLRMAGDPVANVRFNVAHHHHHGGG-S-HHHHHHHHaaaaaaaapaxaaaaaaaa
1c3d_*_1721c3d   -182200FLEANYMNLQRSYTVAIAGHHHHHGGG---HHHHHHHHaaaaaaaaxaxaaaaaaaa
1ee4_A_4301ee4   A431449KPLCDLLEIADNRIIEVTLHHHHHGGGSS-HHHHHHHHaaaaaaaaxabaaaaaaaa
1ja1_A_3831ja1   A385403VLYELAQYASEPSEQEHLHHHHHHGGGB-SHHHHHHHHaaaaaaaaxaxaaaaaaaa
1jdh_A_2781jdh   A280298QKMVALLNKTNVKFLAITTHHHHHGGG---HHHHHHHHaaaaaaaaxaxaaaaaaaa
1kgn_A_841kgn   A84102GAISLLPDAETMHEEAVYTHHHHHGGG-SSHHHHHHHHaaaaaaaaxabaaaaaaaa
1qqf_A_11651qqf   A11751193YLEASYLNLQRPYTVAIAGHHHHHHTT---HHHHHHHHaaaaaaaaxaxaaaaaaaa
1rke_A_411rke   A5775VGKETVQTTEDQILKRDMPHHHTTTTT---HHHHHHHHaaaaaaaabaxaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1c3d_*_1721c3d   *     GOLGLYCEROL L - 190
1c3d_*_1721c3d   *     GOLGLYCEROL Q - 191
1c3d_*_1721c3d   *     GOLGLYCEROL R - 192
1c3d_*_1721c3d   *     GOLGLYCEROL S - 193
1c3d_*_1721c3d   *     GOLGLYCEROL V - 196
1ja1_A_3831ja1   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID E - 398
1kgn_A_841kgn   A     FEFE (III) ION I - 104
1kgn_A_841kgn   A     OF3FERRIC ION, 1 WATER COORDINATED I - 104
1kgn_A_841kgn   A     FEFE (III) ION M - 107
1kgn_A_841kgn   A     FEFE (III) ION E - 108
1kgn_A_841kgn   A     OF3FERRIC ION, 1 WATER COORDINATED E - 108
1kgn_A_841kgn   A     FEFE (III) ION H - 111
1kgn_A_841kgn   A     OF3FERRIC ION, 1 WATER COORDINATED H - 111

Clusters included in this Subclass
CLUSTER: HH.5.168
CLUSTER: HH.6.85
CLUSTER: HH.7.92