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Information on SUBCLASS 3.4.1
Subclass Accession number: 2309
Subclass: 3.4.1 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 48370 (>75 %)  
Number of loops: 55

Average sequence ID (%) : 11.5 +/- 13.9
Average RMSD (Å) : 0.687 +/- 0.237

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XpXXpXX
(φψ)-conformation: aapapaa
Pattern: xxxxx[adegknqst][dehkpqrst][cdehknqrsty]xxxx
Conservation:-1.856-0.7190.385-0.0610.1941.2120.6621.168-1.349-0.610-0.1881.162
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b3u_A_2041b3u   A209220SNLASDEQDSVRHHHHT-S-HHHHaaaaaxaxaaaa
1b3u_A_3251b3u   A330341KELVSDANQHVKHHHHT-S-HHHHaaaaapaxaaaa
1b3u_A_3651b3u   A369380LAQLKDECPEVRHHHHT-S-HHHHaaaaaxaxaaaa
1b3u_A_3961b3u   A408419VELAEDAKWRVRHHHHT-SSHHHHaaaaapaxaaaa
1b3u_A_4401b3u   A447458MAWLVDHVYAIRHHGGG-SSHHHHaaaaaxaxaaaa
1b3u_A_5211b3u   A525536LRMAGDPVANVRHHGGG-S-HHHHaaaaapaxaaaa
1b3u_A_5521b3u   A564575EKLTQDQDVDVKHHHTT-SSHHHHaaaaaxaxaaaa
1c0a_A_2961c0a   A297308DLLKSVEFAVFAHHHTT-S-HHHHaaaaapapaaaa
1c3d_*_1721c3d   -185196ANYMNLQRSYTVHHGGG---HHHHaaaaaxaxaaaa
1dbh_A_3451dbh   A359370QLEEKSEDQEDKHHHHH-S-HHHHaaaaapabaaaa
1dvp_A_401dvp   A4859KKKMNSPNPHSSHHHHT-SSHHHHaaaaaxaxaaaa
1dvp_A_841dvp   A92103SFLESTPHENVRHHHHH-S-HHHHaaaaaxabaaaa
1ee4_A_2591ee4   A263274AKLIYSMDTETLHHHTT-S-HHHHaaaaaxaxaaaa
1ee4_A_3001ee4   A305316VELLSHESTLVQHHHTT-S-HHHHaaaaaxabaaaa
1ee4_A_3421ee4   A347358RLLLSSPKENIKHHHTT-SSHHHHaaaaaxaxaaaa
1ee4_A_4301ee4   A434445CDLLEIADNRIIHHGGGSS-HHHHaaaaaxabaaaa
1ee4_A_4821ee4   A487498FNCQQNENDKIYHHHTT-S-HHHHaaaaaxaxaaaa
1f20_A_11061f20   A11111122QFASLATNEKEKHHHTTB--HHHHaaaaaxabaaaa
1f44_A_1391f44   A147158SLMENSDRCQDIHHHTT---HHHHaaaaapaxaaaa
1hf8_A_561hf8   A6475FERTTNSSWVVVHHHTTSS-HHHHaaaaaxaxaaaa
1hn0_A_3361hn0   A348359RAYVLEKDPTQKHHHHH--SHHHHaaaaaxaxaaaa
1is2_A_5201is2   A541552DKLPKIQDKAVQHHGGG--SHHHHaaaaaxaxaaaa
1j2j_B_1721j2j   B179190ARLLKSSHPEDLHHHHT-S-HHHHaaaaaxaxaaaa
1ja1_A_3831ja1   A388399ELAQYASEPSEQHHGGGB-SHHHHaaaaaxaxaaaa
1jdh_A_2361jdh   A241252VKMLGSPVDSVLHHHTT-S-HHHHaaaaaxabaaaa
1jdh_A_2781jdh   A283294VALLNKTNVKFLHHGGG---HHHHaaaaaxaxaaaa
1jdh_A_3991jdh   A406417VQLLGSDDINVVHHHTT-S-HHHHaaaaaxaxaaaa
1jdh_A_5961jdh   A600611VQLLYSPIENIQHHGGG-S-HHHHaaaaaxaxaaaa
1jdh_A_6371jdh   A641652TELLHSRNEGVAHHGGG-SSHHHHaaaaaxaxaaaa
1jet_A_4441jet   A451462ADTLKVADDTQRHHTTTS--HHHHaaaaababaaaa
1k4t_A_4541k4t   A462473REDWKSKEMKVRHHHTT-SSHHHHaaaaapaxaaaa
1kgn_A_1391kgn   A149160MSYYNGDDPLKKHHHHTSS-HHHHaaaaaxabaaaa
1kgn_A_841kgn   A8798SLLPDAETMHEEHHGGG-SSHHHHaaaaaxabaaaa
1kiy_A_3071kiy   A312323EKVKEEKTEDAQHHHTT---HHHHaaaaaxaxaaaa
1kp8_A_3391kp8   A351362QQIEEATSDYDRHHHHS--SHHHHaaaaaxabaaaa
1m5w_A_1571m5w   A157168GCYADAKTDAEQHHHHH--SHHHHaaaaapabaaaa
1nzn_A_351nzn   A4354WCLVRTRYNDDIHHHTTSSSHHHHaaaaaxaxaaaa
1o8a_A_1641o8a   A167178NVMATSRKYEDLHHHHH---HHHHaaaaaxabaaaa
1oaa_*_2051oaa   -209220LARETSKDPELRHHHHH-S-HHHHaaaaapaxaaaa
1omr_A_1801omr   A182193ILRLIQFEPQKVHHHHH---HHHHaaaaapaxaaaa
1oxx_K_2251oxx   K227238DLYDNPVSIQVAHHHHS-SSHHHHaaaaaxabaaaa
1oyz_A_1261oyz   A134145QITAFDKSTNVRHHHTT-S-HHHHaaaaapaxaaaa
1oyz_A_1611oyz   A165176INLLKDPNGDVRHHHHT-SSHHHHaaaaaxaxaaaa
1oyz_A_251oyz   A2940FRLLDDHNSLKRHHHTT-SSHHHHaaaaaxaxaaaa
1oyz_A_531oyz   A6071IEFCSDKNYIRRHHHHT-SSHHHHaaaaaxaxaaaa
1poc_*_611poc   -6980DCLKNSADTISSHHHHT-S-HHHHaaaaaxaxaaaa
1qgr_A_2121qgr   A223234CEATQCPDTRVRHHHTT-SSHHHHaaaaaxaxaaaa
1qgr_A_2601qgr   A265276IEAMKSDIDEVAHHHHT-SSHHHHaaaaaxaxaaaa
1qgr_A_31qgr   A718LEKTVSPDRLELHHGGG-S-HHHHaaaaaxabaaaa
1qgr_A_3991qgr   A414425IELMKDPSVVVRHHHHT-SSHHHHaaaaaxaxaaaa
1qsa_A_2691qsa   A277288DAIMRSQSTSLIHHHHT---HHHHaaaaaxaxaaaa
1rke_A_1541rke   A177188ERQQELTHQEHRHHHTTBS-HHHHaaaaapaxaaaa
1uiu_A_4281uiu   A436447GEVLATHDETQRHHHHH---HHHHaaaaaxaxaaaa
1ujk_A_601ujk   A7182ETCMKSCGKRFHHHHHTS--HHHHaaaaaxaxaaaa
1upk_A_2071upk   A215226EKLLHSENYVTKHHHTT-SSHHHHaaaaaxaxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1c0a_A_2961c0a   A     AMPADENOSINE MONOPHOSPHATE F - 304
1c0a_A_2961c0a   A     AMPADENOSINE MONOPHOSPHATE V - 306
1c0a_A_2961c0a   A     AMPADENOSINE MONOPHOSPHATE F - 307
1c3d_*_1721c3d   *     GOLGLYCEROL L - 190
1c3d_*_1721c3d   *     GOLGLYCEROL Q - 191
1c3d_*_1721c3d   *     GOLGLYCEROL R - 192
1c3d_*_1721c3d   *     GOLGLYCEROL S - 193
1c3d_*_1721c3d   *     GOLGLYCEROL V - 196
1dbh_A_3451dbh   A     MSESELENOMETHIONINE P - 346
1dbh_A_3451dbh   A     MSESELENOMETHIONINE V - 347
1dbh_A_3451dbh   A     MSESELENOMETHIONINE C - 350
1dbh_A_3451dbh   A     MSESELENOMETHIONINE L - 351
1dbh_A_3451dbh   A     MSESELENOMETHIONINE F - 354
1j2j_B_1721j2j   B     IODIODIDE ION E - 173
1j2j_B_1721j2j   B     IODIODIDE ION K - 176
1j2j_B_1721j2j   B     IODIODIDE ION M - 177
1j2j_B_1721j2j   B     IODIODIDE ION R - 180
1ja1_A_3831ja1   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID E - 398
1jet_A_4441jet   A     IUMURANYL (VI) ION A - 457
1jet_A_4441jet   A     IUMURANYL (VI) ION D - 459
1jet_A_4441jet   A     IUMURANYL (VI) ION R - 462
1kgn_A_841kgn   A     FEFE (III) ION I - 104
1kgn_A_841kgn   A     OF3FERRIC ION, 1 WATER COORDINATED I - 104
1kgn_A_841kgn   A     FEFE (III) ION M - 107
1kgn_A_841kgn   A     FEFE (III) ION E - 108
1kgn_A_841kgn   A     OF3FERRIC ION, 1 WATER COORDINATED E - 108
1kgn_A_841kgn   A     FEFE (III) ION H - 111
1kgn_A_841kgn   A     OF3FERRIC ION, 1 WATER COORDINATED H - 111
1kgn_A_1391kgn   A     FEFE (III) ION L - 167
1kgn_A_1391kgn   A     OF3FERRIC ION, 1 WATER COORDINATED L - 167
1kgn_A_1391kgn   A     FEFE (III) ION E - 168
1kgn_A_1391kgn   A     OF3FERRIC ION, 1 WATER COORDINATED E - 168
1nzn_A_351nzn   A     GOLGLYCEROL R - 49
1nzn_A_351nzn   A     GOLGLYCEROL Y - 50
1nzn_A_351nzn   A     GOLGLYCEROL N - 51
1nzn_A_351nzn   A     GOLGLYCEROL D - 52
1nzn_A_351nzn   A     GOLGLYCEROL D - 53
1nzn_A_351nzn   A     GOLGLYCEROL R - 55
1o8a_A_1641o8a   A     NAGN-ACETYL-D-GLUCOSAMINE W - 180
1oaa_*_2051oaa   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE D - 205
1oaa_*_2051oaa   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE M - 206
1oaa_*_2051oaa   *     OAAOXALOACETATE ION M - 206
1oaa_*_2051oaa   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Q - 207
1oaa_*_2051oaa   *     OAAOXALOACETATE ION Q - 207
1oaa_*_2051oaa   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Q - 208
1oaa_*_2051oaa   *     OAAOXALOACETATE ION Q - 208
1oaa_*_2051oaa   *     OAAOXALOACETATE ION A - 210
1oaa_*_2051oaa   *     OAAOXALOACETATE ION R - 211
1oaa_*_2051oaa   *     OAAOXALOACETATE ION L - 223
1oxx_K_2251oxx   K     IODIODIDE ION P - 225
1oxx_K_2251oxx   K     IODIODIDE ION E - 226
1oxx_K_2251oxx   K     IODIODIDE ION D - 227
1oxx_K_2251oxx   K     IODIODIDE ION N - 231
1oxx_K_2251oxx   K     IODIODIDE ION V - 233
1oxx_K_2251oxx   K     IODIODIDE ION S - 234
1oxx_K_2251oxx   K     IODIODIDE ION I - 235
1oxx_K_2251oxx   K     IODIODIDE ION Q - 236
1oxx_K_2251oxx   K     IODIODIDE ION V - 237
1oyz_A_531oyz   A     MSESELENOMETHIONINE F - 62
1oyz_A_531oyz   A     MSESELENOMETHIONINE C - 63
1oyz_A_531oyz   A     MSESELENOMETHIONINE S - 64
1oyz_A_531oyz   A     MSESELENOMETHIONINE R - 71
1oyz_A_531oyz   A     MSESELENOMETHIONINE D - 72
1oyz_A_531oyz   A     MSESELENOMETHIONINE G - 74
1oyz_A_531oyz   A     MSESELENOMETHIONINE A - 75
1oyz_A_531oyz   A     MSESELENOMETHIONINE L - 78
1oyz_A_1611oyz   A     MSESELENOMETHIONINE L - 167
1oyz_A_1611oyz   A     MSESELENOMETHIONINE L - 168
1oyz_A_1611oyz   A     MSESELENOMETHIONINE K - 169
1oyz_A_1611oyz   A     MSESELENOMETHIONINE R - 176
1oyz_A_1611oyz   A     MSESELENOMETHIONINE N - 177
1oyz_A_1611oyz   A     MSESELENOMETHIONINE A - 180
1poc_*_611poc   *     GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE F - 67
1poc_*_611poc   *     GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE F - 82
1poc_*_611poc   *     GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE V - 83
1poc_*_611poc   *     GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE M - 86
1poc_*_611poc   *     GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE Y - 87
1ujk_A_601ujk   A     IODIODIDE ION E - 62
1ujk_A_601ujk   A     IODIODIDE ION C - 77
1upk_A_2071upk   A     MSESELENOMETHIONINE Y - 207
1upk_A_2071upk   A     MSESELENOMETHIONINE L - 218
1upk_A_2071upk   A     MSESELENOMETHIONINE N - 222
1upk_A_2071upk   A     MSESELENOMETHIONINE L - 230
1upk_A_2071upk   A     MSESELENOMETHIONINE L - 233
1upk_A_2071upk   A     MSESELENOMETHIONINE L - 236
1upk_A_2071upk   A     MSESELENOMETHIONINE L - 237
1upk_A_2071upk   A     MSESELENOMETHIONINE L - 238
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1o8a_A_1641o8a   A CL1CL BINDING SITE FOR CHAIN AR - 186

Clusters included in this Subclass
CLUSTER: HH.3.124
CLUSTER: HH.3.193
CLUSTER: HH.4.4
CLUSTER: HH.4.77
CLUSTER: HH.5.105
CLUSTER: HH.5.186
CLUSTER: HH.5.229
CLUSTER: HH.5.5
CLUSTER: HH.5.55
CLUSTER: HH.6.3
CLUSTER: HH.6.42
CLUSTER: HH.6.74
CLUSTER: HH.7.16