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Information on SUBCLASS 3.4.4
Subclass Accession number: 2312
Subclass: 3.4.4 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 17

Average sequence ID (%) : 9.8 +/- 11.5
Average RMSD (Å) : 0.676 +/- 0.217

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XpXXpXX
(φψ)-conformation: aapapaa
Pattern: x[adegknr]x[ACFILTV]x[adeknrs][acfiklmtv]x[DHNRST]x[aegnqrs][adegkqt]xxx[ilmvy]
Conservation:-0.6550.340-1.2241.544-0.5551.320-0.549-0.7951.843-1.0410.004-0.081-0.718-0.739-0.1181.423
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1al3_*_2971al3   -300315VDTAVALRSNEDIEAMHHHHHH---HHHHHHHaaaaaapaxaaaaaaa
1ca1_*_1741ca1   -176191YADILKNKDFNAWSKEHHHHHH-S-HHHHHHHaaaaaaxaxaaaaaaa
1cy5_A_371cy5   A4055EEKVRNEPTQQQRAAMHHHHHTSSSHHHHHHHaaaaaaxabaaaaaaa
1ezv_C_2761ezv   C279294YAILRSIPDKLLGVITHHHHHTSSSHHHHHHHaaaaaababaaaaaaa
1gz3_A_611gz3   A6984HRNLKKMTSPLEKYIYHHHHHT---HHHHHHHaaaaaaxaxaaaaaaa
1jj2_O_281jj2   O2843QGDIADAITREDVRELHHHHHT--SHHHHHHHaaaaaaxabaaaaaaa
1k87_A_1611k87   A169184AEALLRIPDKATRDALHHHHHTSS-HHHHHHHaaaaaaxabaaaaaaa
1lla_*_511lla   -6176YEVFWEAGDFNDFIEIHHHHHT-SSHHHHHHHaaaaaaxabaaaaaaa
1mty_G_101mty   G1631VNKIAHVNTLEKAAEMHHHHHT--SHHHHHHHaaaaaaxabaaaaaaa
1mzg_A_71mzg   A1126LRNFLRCANWEEKYLYHHHHHH-SSHHHHHHHaaaaaapabaaaaaaa
1nvu_S_8191nvu   S836851EKCIVETENLEERVAVHHHHHT--SHHHHHHHaaaaaabaxaaaaaaa
1p80_A_5171p80   A528543SFELSKVVRPYIRERVHHHHHT-SSHHHHHHHaaaaaaxaxaaaaaaa
1qls_A_461qls   A4661AAFTQNQKDPGVLDRMHHHHHH---THHHHHHaaaaaapaxaaaaaaa
1qr0_A_261qr0   A2944REKCRRFYHKEDAHRTHHHHHH-SSHHHHHHHaaaaaaxaxaaaaaaa
1r3c_A_2441r3c   A244259AELLKKISSESARNYIHHHHHH---HHHHHHHaaaaaaxapaaaaaaa
1s9r_A_1081s9r   A115130RNFLKAKKTSRELVEIHHHHHT-SSHHHHHHHaaaaaaxabaaaaaaa
1v9m_A_1211v9m   A124139WRQAYEAQDPAGMAQVHHHHHHSSSHHHHHHHaaaaaapabaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ca1_*_1741ca1   *     CDCADMIUM ION D - 174
1ca1_*_1741ca1   *     CDCADMIUM ION F - 175
1ca1_*_1741ca1   *     CDCADMIUM ION D - 178
1ca1_*_1741ca1   *     CDCADMIUM ION L - 180
1ca1_*_1741ca1   *     CDCADMIUM ION K - 181
1cy5_A_371cy5   A     ZNZINC ION I - 37
1cy5_A_371cy5   A     ZNZINC ION E - 40
1cy5_A_371cy5   A     ZNZINC ION E - 41
1cy5_A_371cy5   A     ZNZINC ION K - 42
1cy5_A_371cy5   A     ZNZINC ION N - 45
1cy5_A_371cy5   A     ZNZINC ION Q - 50
1cy5_A_371cy5   A     ZNZINC ION A - 54
1ezv_C_2761ezv   C     SMASTIGMATELLIN A F - 278
1ezv_C_2761ezv   C     SMASTIGMATELLIN A Y - 279
1ezv_C_2761ezv   C     SMASTIGMATELLIN A L - 282
1ezv_C_2761ezv   C     SMASTIGMATELLIN A M - 295
1ezv_C_2761ezv   C     SMASTIGMATELLIN A F - 296
1ezv_C_2761ezv   C     SMASTIGMATELLIN A I - 299
1gz3_A_611gz3   A     FUMFUMARIC ACID I - 63
1gz3_A_611gz3   A     FUMFUMARIC ACID Q - 64
1gz3_A_611gz3   A     FUMFUMARIC ACID A - 65
1gz3_A_611gz3   A     FUMFUMARIC ACID R - 67
1gz3_A_611gz3   A     FUMFUMARIC ACID F - 68
1gz3_A_611gz3   A     FUMFUMARIC ACID Y - 84
1gz3_A_611gz3   A     FUMFUMARIC ACID G - 87
1gz3_A_611gz3   A     FUMFUMARIC ACID I - 88
1k87_A_1611k87   A     1PEPENTAETHYLENE GLYCOL E - 170
1k87_A_1611k87   A     1PEPENTAETHYLENE GLYCOL R - 174
1mzg_A_71mzg   A     MSESELENOMETHIONINE K - 7
1mzg_A_71mzg   A     MSESELENOMETHIONINE L - 10
1mzg_A_71mzg   A     MSESELENOMETHIONINE L - 11
1mzg_A_71mzg   A     MSESELENOMETHIONINE F - 14
1mzg_A_71mzg   A     MSESELENOMETHIONINE L - 15
1mzg_A_71mzg   A     MSESELENOMETHIONINE W - 20
1mzg_A_71mzg   A     MSESELENOMETHIONINE K - 23
1mzg_A_71mzg   A     MSESELENOMETHIONINE I - 27
1nvu_S_8191nvu   S     PO4PHOSPHATE ION L - 822
1nvu_S_8191nvu   S     PO4PHOSPHATE ION R - 826
1qls_A_461qls   A     CACALCIUM ION L - 65
1qr0_A_261qr0   A     COACOENZYME A K - 28
1qr0_A_261qr0   A     COACOENZYME A K - 31
1qr0_A_261qr0   A     COACOENZYME A F - 35
1qr0_A_261qr0   A     COACOENZYME A R - 43
1qr0_A_261qr0   A     COACOENZYME A T - 44
1qr0_A_261qr0   A     COACOENZYME A L - 45
1qr0_A_261qr0   A     COACOENZYME A G - 47
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ca1_*_1741ca1   * CD7CD FROM CRYSTALLISATION BUFFER AT PROTEIN SURFACE.D - 174
1ca1_*_1741ca1   * CD7CD FROM CRYSTALLISATION BUFFER AT PROTEIN SURFACE.D - 178
1gz3_A_611gz3   A AC4FUM BINDING SITE FOR CHAIN AQ - 64
1gz3_A_611gz3   A AC4FUM BINDING SITE FOR CHAIN AR - 67

Clusters included in this Subclass
CLUSTER: HH.2.85
CLUSTER: HH.3.192
CLUSTER: HH.3.57
CLUSTER: HH.4.43
CLUSTER: HH.4.97
CLUSTER: HH.5.46