ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.5.6

Subclass Accession number: 4709
Subclass: 3.5.6

PSSM

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 5

Average sequence ID (%) : 16.4 +/- 30.4
Average RMSD (Å) : 0.620 +/- 0.130

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 90-135

rho (°): 180-225

Consensus Sequence:	XphXpXp
(φψ)-conformation:	aapabaa

Pattern:	[ADES]	x	[VY]	x	[KNS]	[ILP]	[aqt]	[DNRS]	[kpt]	x	[TV]	[ALV]	[AGST]	x
Conservation:	0.082	-1.032	2.355	-1.153	1.142	-0.282	-0.476	0.082	-1.060	-0.380	1.230	0.200	0.073	-0.782

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1g29_1_224	1g29	1	226	239	EVYDKPANTFVAGF	HHHHS-SBHHHHHH	aaaaapabaaaaaa
1i1w_A_93	1i1w	A	93	106	SWVSSITDKNTLTN	HHHHT---HHHHHH	aaaaaxabaaaaaa
1oxx_K_225	1oxx	K	227	240	DLYDNPVSIQVASL	HHHHS-SSHHHHHH	aaaaaxabaaaaaa
1qqf_A_1165	1qqf	A	1178	1191	ASYLNLQRPYTVAI	HHHTT---HHHHHH	aaaaaxaxaaaaaa
1tux_*_93	1tux	-	93	106	SWVVSITDKNTLTN	HHHHT---HHHHHH	aaaaaxaxaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1g29_1_224	1g29	1	MGMAGNESIUM ION	D - 225
1g29_1_224	1g29	1	MGMAGNESIUM ION	Y - 228
1g29_1_224	1g29	1	MGMAGNESIUM ION	D - 229
1i1w_A_93	1i1w	A	UNXUNKNOWN ATOM OR ION	K - 101
1i1w_A_93	1i1w	A	UNXUNKNOWN ATOM OR ION	K - 109
1i1w_A_93	1i1w	A	GOLGLYCEROL	N - 110
1i1w_A_93	1i1w	A	UNXUNKNOWN ATOM OR ION	T - 113
1i1w_A_93	1i1w	A	GOLGLYCEROL	T - 113
1i1w_A_93	1i1w	A	GOLGLYCEROL	T - 114
1i1w_A_93	1i1w	A	GOLGLYCEROL	T - 117
1i1w_A_93	1i1w	A	GOLGLYCEROL	R - 118
1i1w_A_93	1i1w	A	ACNACETONE	R - 118
1oxx_K_225	1oxx	K	IODIODIDE ION	P - 225
1oxx_K_225	1oxx	K	IODIODIDE ION	E - 226
1oxx_K_225	1oxx	K	IODIODIDE ION	D - 227
1oxx_K_225	1oxx	K	IODIODIDE ION	N - 231
1oxx_K_225	1oxx	K	IODIODIDE ION	V - 233
1oxx_K_225	1oxx	K	IODIODIDE ION	S - 234
1oxx_K_225	1oxx	K	IODIODIDE ION	I - 235
1oxx_K_225	1oxx	K	IODIODIDE ION	Q - 236
1oxx_K_225	1oxx	K	IODIODIDE ION	V - 237

Clusters included in this Subclass

CLUSTER: HH.3.212

CLUSTER: HH.4.238

CLUSTER: HH.5.256