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Information on SUBCLASS 3.6.1
Subclass Accession number: 4714
Subclass: 3.6.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 26

Average sequence ID (%) : 11.5 +/- 15.6
Average RMSD (Å) : 0.685 +/- 0.191

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XXXXpXX
(φψ)-conformation: aabapaa
Pattern: [acfgiklv]x[adeknqrt]xxx[denqty]xx[adegkrst]x
Conservation:1.170-1.1220.912-0.911-0.730-0.4702.124-0.1970.069-0.566-0.280
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a28_A_8381a28   A856866IGLRQKGVVSSHHTT--SHHHHaaaabapaaaa
1a6q_*_2471a6q   -257267RLEVTDDLEKVHHTT---HHHHaaaabaxaaaa
1aa7_A_901aa7   A102112KLKREITFHGAHHTT--SHHHHaaaaxabaaaa
1ce2_A_2131ce2   A214224VFENLPEKADRHHHH--SHHHHaaaabaxaaaa
1cmi_A_151cmi   A2838ALEKYNIEKDIHHHH-SSHHHHaaaabaxaaaa
1ef1_A_891ef1   A8999VSEELIQDITQHHHH--SHHHHaaaabaxaaaa
1eg7_A_12041eg7   A12081218CLCLASDLMDLHHHH-SSHHHHaaaaxabaaaa
1ekk_A_2001ekk   A207217FCAVEENPLFAHHTT-SSHHHHaaaabaxaaaa
1f5m_A_211f5m   A3545LSDGQVNWVCNHHTT--BHHHHaaaabapaaaa
1h0o_A_1571h0o   A181191IDTYIKDPKERHHHH---HHHHaaaabaxaaaa
1h45_A_2131h45   A214224VFEDLSDEAERHHHH---HHHHaaaabaxaaaa
1h4r_A_1051h4r   A105115AEEELVQEITQHHHH--SHHHHaaaaxaxaaaa
1h6t_A_441h6t   A4454IKQIFSDDAFAHHHH--SHHHHaaaabaxaaaa
1h6u_A_441h6u   A4454INVIFPDPALAHHHH--SHHHHaaaabwxaaaa
1h97_A_1051h97   A119129FQNLVKDAEGKHHHHSSSHHHHaaaababaaaa
1hnn_A_1841hnn   A184194LEAVSPDLASFHHHH-SSHHHHaaaababaaaa
1iuq_A_3131iuq   A316326IAATHKNPEEVHHHTSSSHHHHaaaababaaaa
1j19_A_891j19   A8999VSEELIQEITQHHHH--SHHHHaaaaxaxaaaa
1mwm_A_2321mwm   A235245LKQRINDENKIHHHH-S-SHHHaaaababaaaa
1puo_A_1101puo   A117127VAQYKALPVVLHHTT---HHHHaaaabaxaaaa
1q16_A_1151q16   A124134AKALHSDPVEAHHTT-SSHHHHaaaabaxaaaa
1ryo_A_2091ryo   A210220IFENLANKADRHHHH--SHHHHaaaabaxaaaa
1s3e_A_1481s3e   A152162LDKLCWTESAKHHHH-SSHHHHaaaaxabaaaa
1v8a_A_2101v8a   A228238AYEEAKYPGSFHHHH--SHHHHaaaababaaaa
1v9m_A_1461v9m   A154164VLRETQDLARVHHTT---HHHHaaaabaxaaaa
2liv_*_2762liv   -290300GLNQSDDPAEIHHTT-S-HHHHaaaabaxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a28_A_8381a28   A     STRPROGESTERONE L - 887
1a28_A_8381a28   A     STRPROGESTERONE Y - 890
1a28_A_8381a28   A     STRPROGESTERONE C - 891
1a28_A_8381a28   A     STRPROGESTERONE L - 892
1a28_A_8381a28   A     STRPROGESTERONE T - 894
1a28_A_8381a28   A     STRPROGESTERONE F - 895
1ef1_A_891ef1   A     MSESELENOMETHIONINE R - 100
1ef1_A_891ef1   A     MSESELENOMETHIONINE L - 101
1ef1_A_891ef1   A     MSESELENOMETHIONINE F - 102
1ef1_A_891ef1   A     MSESELENOMETHIONINE L - 104
1ef1_A_891ef1   A     MSESELENOMETHIONINE Q - 105
1ef1_A_891ef1   A     MSESELENOMETHIONINE E - 108
1ekk_A_2001ekk   A     CSWCYSTEINE-S-DIOXIDE L - 200
1ekk_A_2001ekk   A     CSWCYSTEINE-S-DIOXIDE T - 201
1ekk_A_2001ekk   A     CSWCYSTEINE-S-DIOXIDE S - 202
1ekk_A_2001ekk   A     CSWCYSTEINE-S-DIOXIDE V - 203
1h0o_A_1571h0o   A     COCOBALT (II) ION Q - 166
1h0o_A_1571h0o   A     COCOBALT (II) ION E - 170
1h0o_A_1571h0o   A     COCOBALT (II) ION H - 173
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE E - 107
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 108
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 109
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 110
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 111
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE E - 112
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 115
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 136
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 139
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 140
1h97_A_1051h97   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 143
1hnn_A_1841hnn   A     SKF1,2,3,4-TETRAHYDRO-ISOQUINOLINE-7-SULFONIC ACID AMIDE E - 185
1hnn_A_1841hnn   A     SAHS-ADENOSYL-L-HOMOCYSTEINE A - 186
1hnn_A_1841hnn   A     SKF1,2,3,4-TETRAHYDRO-ISOQUINOLINE-7-SULFONIC ACID AMIDE A - 186
1hnn_A_1841hnn   A     SAHS-ADENOSYL-L-HOMOCYSTEINE V - 187
1iuq_A_3131iuq   A     GOLGLYCEROL E - 328
1iuq_A_3131iuq   A     GOLGLYCEROL S - 331
1iuq_A_3131iuq   A     GOLGLYCEROL K - 332
1iuq_A_3131iuq   A     MSESELENOMETHIONINE F - 335
1iuq_A_3131iuq   A     GOLGLYCEROL F - 335
1iuq_A_3131iuq   A     MSESELENOMETHIONINE D - 336
1iuq_A_3131iuq   A     GOLGLYCEROL D - 336
1iuq_A_3131iuq   A     MSESELENOMETHIONINE S - 337
1iuq_A_3131iuq   A     MSESELENOMETHIONINE V - 338
1s3e_A_1481s3e   A     RHP(3R)-3-(PROP-2-YNYLAMINO)INDAN-5-OL F - 168
1s3e_A_1481s3e   A     RHP(3R)-3-(PROP-2-YNYLAMINO)INDAN-5-OL L - 171
1s3e_A_1481s3e   A     RHP(3R)-3-(PROP-2-YNYLAMINO)INDAN-5-OL C - 172
1s3e_A_1481s3e   A     RHP(3R)-3-(PROP-2-YNYLAMINO)INDAN-5-OL V - 173
1v9m_A_1461v9m   A     GOLGLYCEROL P - 146
1v9m_A_1461v9m   A     GOLGLYCEROL R - 149
1v9m_A_1461v9m   A     GOLGLYCEROL D - 175
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1aa7_A_901aa7   A S1RNA-BINDING SITE.K - 95
1aa7_A_901aa7   A S1RNA-BINDING SITE.K - 98
1aa7_A_901aa7   A S1RNA-BINDING SITE.R - 101
1aa7_A_901aa7   A S1RNA-BINDING SITE.K - 102
1aa7_A_901aa7   A S1RNA-BINDING SITE.R - 105
1h0o_A_1571h0o   A CO1CO BINDING SITE FOR CHAIN AQ - 166
1h0o_A_1571h0o   A CO1CO BINDING SITE FOR CHAIN AE - 170

Clusters included in this Subclass
CLUSTER: HH.3.43
CLUSTER: HH.4.24
CLUSTER: HH.4.354
CLUSTER: HH.5.312
CLUSTER: HH.5.88