Information on SUBCLASS 3.6.1 |
Subclass Accession number: 4714
Subclass: 3.6.1 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 26 Average sequence ID (%) : 11.5 +/- 15.6 Average RMSD (Å) : 0.685 +/- 0.191 Consensus geometry
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Consensus Sequence: | XXXXpXX |
(φψ)-conformation: | aabapaa |
Pattern: | [acfgiklv] | x | [adeknqrt] | x | x | x | [denqty] | x | x | [adegkrst] | x |
Conservation: | 1.170 | -1.122 | 0.912 | -0.911 | -0.730 | -0.470 | 2.124 | -0.197 | 0.069 | -0.566 | -0.280 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a28_A_838 | 1a28 | A | 856 | 866 | IGLRQKGVVSS | HHTT--SHHHH | aaaabapaaaa |
1a6q_*_247 | 1a6q | - | 257 | 267 | RLEVTDDLEKV | HHTT---HHHH | aaaabaxaaaa |
1aa7_A_90 | 1aa7 | A | 102 | 112 | KLKREITFHGA | HHTT--SHHHH | aaaaxabaaaa |
1ce2_A_213 | 1ce2 | A | 214 | 224 | VFENLPEKADR | HHHH--SHHHH | aaaabaxaaaa |
1cmi_A_15 | 1cmi | A | 28 | 38 | ALEKYNIEKDI | HHHH-SSHHHH | aaaabaxaaaa |
1ef1_A_89 | 1ef1 | A | 89 | 99 | VSEELIQDITQ | HHHH--SHHHH | aaaabaxaaaa |
1eg7_A_1204 | 1eg7 | A | 1208 | 1218 | CLCLASDLMDL | HHHH-SSHHHH | aaaaxabaaaa |
1ekk_A_200 | 1ekk | A | 207 | 217 | FCAVEENPLFA | HHTT-SSHHHH | aaaabaxaaaa |
1f5m_A_21 | 1f5m | A | 35 | 45 | LSDGQVNWVCN | HHTT--BHHHH | aaaabapaaaa |
1h0o_A_157 | 1h0o | A | 181 | 191 | IDTYIKDPKER | HHHH---HHHH | aaaabaxaaaa |
1h45_A_213 | 1h45 | A | 214 | 224 | VFEDLSDEAER | HHHH---HHHH | aaaabaxaaaa |
1h4r_A_105 | 1h4r | A | 105 | 115 | AEEELVQEITQ | HHHH--SHHHH | aaaaxaxaaaa |
1h6t_A_44 | 1h6t | A | 44 | 54 | IKQIFSDDAFA | HHHH--SHHHH | aaaabaxaaaa |
1h6u_A_44 | 1h6u | A | 44 | 54 | INVIFPDPALA | HHHH--SHHHH | aaaabwxaaaa |
1h97_A_105 | 1h97 | A | 119 | 129 | FQNLVKDAEGK | HHHHSSSHHHH | aaaababaaaa |
1hnn_A_184 | 1hnn | A | 184 | 194 | LEAVSPDLASF | HHHH-SSHHHH | aaaababaaaa |
1iuq_A_313 | 1iuq | A | 316 | 326 | IAATHKNPEEV | HHHTSSSHHHH | aaaababaaaa |
1j19_A_89 | 1j19 | A | 89 | 99 | VSEELIQEITQ | HHHH--SHHHH | aaaaxaxaaaa |
1mwm_A_232 | 1mwm | A | 235 | 245 | LKQRINDENKI | HHHH-S-SHHH | aaaababaaaa |
1puo_A_110 | 1puo | A | 117 | 127 | VAQYKALPVVL | HHTT---HHHH | aaaabaxaaaa |
1q16_A_115 | 1q16 | A | 124 | 134 | AKALHSDPVEA | HHTT-SSHHHH | aaaabaxaaaa |
1ryo_A_209 | 1ryo | A | 210 | 220 | IFENLANKADR | HHHH--SHHHH | aaaabaxaaaa |
1s3e_A_148 | 1s3e | A | 152 | 162 | LDKLCWTESAK | HHHH-SSHHHH | aaaaxabaaaa |
1v8a_A_210 | 1v8a | A | 228 | 238 | AYEEAKYPGSF | HHHH--SHHHH | aaaababaaaa |
1v9m_A_146 | 1v9m | A | 154 | 164 | VLRETQDLARV | HHTT---HHHH | aaaabaxaaaa |
2liv_*_276 | 2liv | - | 290 | 300 | GLNQSDDPAEI | HHTT-S-HHHH | aaaabaxaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1aa7_A_90 | 1aa7 | A | S1RNA-BINDING SITE. | K - 95 |
1aa7_A_90 | 1aa7 | A | S1RNA-BINDING SITE. | K - 98 |
1aa7_A_90 | 1aa7 | A | S1RNA-BINDING SITE. | R - 101 |
1aa7_A_90 | 1aa7 | A | S1RNA-BINDING SITE. | K - 102 |
1aa7_A_90 | 1aa7 | A | S1RNA-BINDING SITE. | R - 105 |
1h0o_A_157 | 1h0o | A | CO1CO BINDING SITE FOR CHAIN A | Q - 166 |
1h0o_A_157 | 1h0o | A | CO1CO BINDING SITE FOR CHAIN A | E - 170 |
Clusters included in this Subclass |
CLUSTER: HH.3.43 |
CLUSTER: HH.4.24 |
CLUSTER: HH.4.354 |
CLUSTER: HH.5.312 |
CLUSTER: HH.5.88 |