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Information on SUBCLASS 4.1.1
Subclass Accession number: 2361
Subclass: 4.1.1 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 31

Average sequence ID (%) : 14.9 +/- 15.5
Average RMSD (Å) : 0.590 +/- 0.295

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XXcXhpXp
(φψ)-conformation: aalabpaa
Pattern: xxxx[afilvy]xx[EGKQS]x[fhilmvw][denrstwy]x[adekqrs][dekqstwy][afgiklv]
Conservation:-0.953-0.976-0.730-0.2320.185-0.082-0.5992.937-0.5570.2260.061-0.7951.1950.320-0.001
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a3a_A_211a3a   A2943GEQLVKGGYVEPEYVHHHHHHTTSB-THHHaaaaaaavabxaaaa
1b7g_O_3041b7g   O310324DAIRASMKLMSAEDSHHHHHHTT-S-HHHHaaaaaaalabxaaaa
1cy5_A_221cy5   A2640MDHMISDGFLTISEEHHHHHHHTSS-HHHHaaaaaaagabxaaaa
1d2t_A_1691d2t   A180194GQSRVICGYHWQSDVHHHHHHHTSS-HHHHaaaaaaavabxaaaa
1eu8_A_3701eu8   A380394YVNSALAGKISPQEAHHHHHHHTSS-HHHHaaaaaaavabxaaaa
1f14_A_2071f14   A218232AIRLYERGDASKEDIHHHHHHTTSS-HHHHaaaaaaavabxaaaa
1h16_A_2801h16   A287301IERDLKAGKITEQEAHHHHHHTTSS-HHHHaaaaaaavabxaaaa
1i58_A_4561i58   A460474IRKAIEKGLIDESKAHHHHHHTTSS-HHHHaaaaaaavabbaaaa
1ire_B_281ire   B3751FPATFRAGFMGLDEFHHHHHHTTS--HHHHaaaaaaavabbaaaa
1is2_A_5711is2   A571585GGDFLEGSIITGAQLHHHHHHTTSS-HHHHaaaaaaalabxaaaa
1kbl_A_3431kbl   A350364ACDLVDEGMITEEEAHHHHHHTTSS-HHHHaaaaaaavabxaaaa
1kut_A_1271kut   A127141VDHLEILGIATKKQAHHHHHHTTS--HHHHaaaaaaavabbaaaa
1l8a_A_1441l8a   A148162YARAFLEGRLTQEQLHHHHHHTTSS-HHHHaaaaaaavabxaaaa
1lm5_A_27471lm5   A27472761TEEAIRKGFIDGRAAHHHHHHTTSS-HHHHaaaaaaavabbaaaa
1nh2_D_141nh2   D2337LDTLISDGRIEASLAHHHHHHTTSS-HHHHaaaaaaavabbaaaa
1nvp_D_101nvp   D1933LDELIQSQQITPQLAHHHHHHTTSS-HHHHaaaaaaalabxaaaa
1ohl_A_2901ohl   A296310LHAAAEKGVVDLKTIHHHHHHTTSS-HHHHaaaaaaavabbaaaa
1ols_A_3151ols   A320334RHYLLSQGWWDEEQEHHHHHHHT---HHHHaaaaaaavabbaaaa
1oqv_A_631oqv   A7084TSGLVSLGKISSDEAHHHHHHTTSS-HHHHaaaaaaavabxaaaa
1paq_A_5811paq   A596610VYHFIATQTLGPKDAHHHHHHTTSS-HHHHaaaaaaalabxaaaa
1pin_A_821pin   A92106YIQKIKSGEEDFESLHHHHHHHTSS-HHHHaaaaaaavabxaaaa
1q15_A_4221q15   A425439REYADSLQLLPKDIVHHHHHHTS-S-HHHHaaaaaaalabxaaaa
1qi9_A_4651qi9   A477491AFGRQMLGIHYRFDGHHHHHHTTS--HHHHaaaaaaagabbaaaa
1umd_A_2961umd   A301315RRFLEARGLWNEEWEHHHHHTTT---HHHHaaaaaaavabbaaaa
1up8_A_5311up8   A543557AIGRNMAGVHYFSDQHHHHHHHTS--HHHHaaaaaaavabxaaaa
1vdk_A_4351vdk   A436450KQAALELGYLTEEEFHHHHHHTSSS-HHHHaaaaaaavabxaaaa
1vfr_A_941vfr   A101115LSKAVADKRITEEQKHHHHHHTTSS-HHHHaaaaaaavabxaaaa
1vns_*_4791vns   -487501AISRIFLGVHWRFDAHHHHHHTTSS-HHHHaaaaaaavabxaaaa
2fok_A_5482fok   A554568GGEMIKAGTLTLEEVHHHHHHHTS--HHHHaaaaaaavabbaaaa
3mbp_*_3363mbp   -346360AVINAASGRQTVDEAHHHHHHHTSS-HHHHaaaaaaavabxaaaa
3ygs_P_273ygs   P2741WDVLLSRELFRPHMIHHHHHHTTSS-HHHHaaaaaaalabxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cy5_A_221cy5   A     ZNZINC ION S - 23
1cy5_A_221cy5   A     ZNZINC ION Y - 24
1cy5_A_221cy5   A     ZNZINC ION M - 26
1cy5_A_221cy5   A     ZNZINC ION D - 27
1cy5_A_221cy5   A     ZNZINC ION H - 28
1cy5_A_221cy5   A     ZNZINC ION I - 30
1cy5_A_221cy5   A     ZNZINC ION D - 32
1cy5_A_221cy5   A     ZNZINC ION I - 37
1cy5_A_221cy5   A     ZNZINC ION E - 40
1cy5_A_221cy5   A     ZNZINC ION E - 41
1cy5_A_221cy5   A     ZNZINC ION K - 42
1i58_A_4561i58   A     ACTACETATE ION K - 456
1i58_A_4561i58   A     ACTACETATE ION K - 458
1i58_A_4561i58   A     ACPPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER K - 458
1i58_A_4561i58   A     ACTACETATE ION I - 459
1i58_A_4561i58   A     ACTACETATE ION K - 462
1ire_B_281ire   B     CEAS-HYDROXY-CYSTEINE L - 48
1ire_B_281ire   B     CSD3-SULFINOALANINE F - 51
1ire_B_281ire   B     CSD3-SULFINOALANINE R - 52
1ire_B_281ire   B     CEAS-HYDROXY-CYSTEINE R - 52
1ire_B_281ire   B     COCOBALT (II) ION R - 52
1ire_B_281ire   B     CSD3-SULFINOALANINE E - 56
1kut_A_1271kut   A     MSESELENOMETHIONINE H - 129
1kut_A_1271kut   A     MSESELENOMETHIONINE L - 130
1kut_A_1271kut   A     MSESELENOMETHIONINE I - 135
1kut_A_1271kut   A     MSESELENOMETHIONINE A - 136
1kut_A_1271kut   A     MSESELENOMETHIONINE T - 137
1kut_A_1271kut   A     MSESELENOMETHIONINE K - 139
1kut_A_1271kut   A     MSESELENOMETHIONINE Q - 140
1kut_A_1271kut   A     MSESELENOMETHIONINE A - 141
1kut_A_1271kut   A     MSESELENOMETHIONINE E - 142
1ohl_A_2901ohl   A     PBG3-[5-(AMINOMETHYL)-4-(CARBOXYMETHYL)-1H-PYRROL-3-YL] PROPANOIC ACID S - 290
1ohl_A_2901ohl   A     PBG3-[5-(AMINOMETHYL)-4-(CARBOXYMETHYL)-1H-PYRROL-3-YL] PROPANOIC ACID G - 291
1paq_A_5811paq   A     MSESELENOMETHIONINE I - 589
1paq_A_5811paq   A     MSESELENOMETHIONINE A - 591
1paq_A_5811paq   A     MSESELENOMETHIONINE L - 592
1paq_A_5811paq   A     MSESELENOMETHIONINE L - 593
1paq_A_5811paq   A     MSESELENOMETHIONINE R - 595
1paq_A_5811paq   A     MSESELENOMETHIONINE V - 614
1paq_A_5811paq   A     MSESELENOMETHIONINE Q - 617
1paq_A_5811paq   A     MSESELENOMETHIONINE W - 618
1pin_A_821pin   A     1PG2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL N - 90
1pin_A_821pin   A     1PG2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL I - 96
1pin_A_821pin   A     1PG2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL K - 97
1pin_A_821pin   A     1PG2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL F - 103
1pin_A_821pin   A     1PG2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL E - 104
1qi9_A_4651qi9   A     VO4VANADATE ION R - 480
1qi9_A_4651qi9   A     VO4VANADATE ION I - 485
1qi9_A_4651qi9   A     VO4VANADATE ION H - 486
1up8_A_5311up8   A     PO4PHOSPHATE ION R - 546
1up8_A_5311up8   A     PO4PHOSPHATE ION V - 551
1up8_A_5311up8   A     PO4PHOSPHATE ION H - 552
1up8_A_5311up8   A     PO4PHOSPHATE ION Q - 557
1vfr_A_941vfr   A     FMNFLAVIN MONONUCLEOTIDE R - 109
3mbp_*_3363mbp   *     GLCGLUCOSE M - 336
3mbp_*_3363mbp   *     GLCGLUCOSE S - 337
3mbp_*_3363mbp   *     GLCGLUCOSE W - 340
3mbp_*_3363mbp   *     GLCGLUCOSE Y - 341
3mbp_*_3363mbp   *     GLCGLUCOSE R - 344
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1up8_A_5311up8   A VANVANADATE BINDING SITE, ACTIVE SITER - 546
1up8_A_5311up8   A VANVANADATE BINDING SITE, ACTIVE SITEH - 552

Clusters included in this Subclass
CLUSTER: HH.3.118
CLUSTER: HH.4.22
CLUSTER: HH.5.127
CLUSTER: HH.5.9
CLUSTER: HH.6.7