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Information on SUBCLASS 4.1.6
Subclass Accession number: 2366
Subclass: 4.1.6 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : - (>50 %)  
GO : GO:0030151 (>50 %)  GO:0046914 (>50 %)  
SCOP : 51350 (>50 %)  53705 (>50 %)  53706 (>50 %)  53707 (>50 %)  
Number of loops: 6

Average sequence ID (%) : 15.8 +/- 16.7
Average RMSD (Å) : 0.800 +/- 0.316

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: pXphXcXX
(φψ)-conformation: aalabpaa
Pattern: x[ilv][FIVY][ehns][aef][DEGNR][lvw][hivy][DHN][kp][adgr][ef][ILVW][AEKQ][AENRS][CHRSY]
Conservation:-1.2060.1731.071-0.129-0.328-0.067-0.990-1.1182.5510.189-1.3280.5240.6320.778-0.111-0.642
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aa6_*_2231aa6   -233248VIIEENLYDKAFVASRHHHHTT-S-HHHHHHHaaaaalaxxaaaaaaa
1eu1_A_2431eu1   A253268TLYSEDLHDKDFLENCHHHHTT-S-HHHHHHHaaaaalaxxaaaaaaa
1g8k_A_3061g8k   A316331YVVEQGWIDKPFIEAHHHHHHT-S-HHHHHHHaaaaavabbaaaaaaa
1n3l_A_2921n3l   A297312KDFAAEVVHPGDLKNSHHHHTT-S-HHHHHHHaaaaavabxaaaaaaa
1thf_D_2251thf   D225240SVFHFREIDVRELKEYHHHHTT-S-HHHHHHHaaaaalabxaaaaaaa
2nap_A_2252nap   A235250VIINEELDNPRFWQRYHHHHTT-S-HHHHHHHaaaaalaxbaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aa6_*_2231aa6   *     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE N - 223
1eu1_A_2431eu1   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE D - 243
1g8k_A_3061g8k   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE D - 306
1n3l_A_2921n3l   A     GOLGLYCEROL Y - 292
1thf_D_2251thf   D     PO4PHOSPHATE ION S - 225
1thf_D_2251thf   D     PO4PHOSPHATE ION V - 226
2nap_A_2252nap   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE D - 225

Clusters included in this Subclass
CLUSTER: HH.4.85