Logo
Information on SUBCLASS 4.2.1
Subclass Accession number: 9037
Subclass: 4.2.1 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 13

Average sequence ID (%) : 14.7 +/- 17.3
Average RMSD (Å) : 0.892 +/- 0.296

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 90-135 rho (°): 180-225
Consensus Sequence: pXXXXpXX
(φψ)-conformation: aalappaa
Pattern: x[ailmvw][fgilvy][aekns][aeknqst][DEGKNR][aekl][hilvy][dhnt][dkp]xx[ailvwy]x[AEGNQRS]x
Conservation:-1.176-0.442-0.0351.192-0.3431.054-1.002-0.1291.4991.097-1.848-0.3310.424-1.0411.222-0.140
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aa6_*_2231aa6   -233248VIIEENLYDKAFVASRHHHHTT-S-HHHHHHHaaaaalaxxaaaaaaa
1dmr_*_2431dmr   -253268TLVAEDLYDKDFIANYHHHHTT-S-HHHHHHHaaaaalaxxaaaaaaa
1eu1_A_2431eu1   A253268TLYSEDLHDKDFLENCHHHHTT-S-HHHHHHHaaaaalaxxaaaaaaa
1g8k_A_3061g8k   A316331YVVEQGWIDKPFIEAHHHHHHT-S-HHHHHHHaaaaavabbaaaaaaa
1h0h_A_2411h0h   A251266YILEKELYFKDYVVNYHHHHTT-S-HHHHHHHaaaaalaxxaaaaaaa
1j1u_A_2701j1u   A275290SLFKNKELHPMDLKNAHHHHTTSS-HHHHHHHaaaaavabxaaaaaaa
1n3l_A_2921n3l   A297312KDFAAEVVHPGDLKNSHHHHTT-S-HHHHHHHaaaaavabxaaaaaaa
1qle_C_531qle   C7186NEGETGEHTPVVRIGLHHHHTT---HHHHHHHaaaaavaxpaaaaaaa
1qnf_*_2441qnf   -245260PALKFGAIGIRQAWQAHHHHTTSS-HHHHHHHaaaaavabxaaaaaaa
1qsa_A_1381qsa   A145160VWRASGKQDPLAYLERHHHHTT-S-HHHHHHHaaaaavaxxaaaaaaa
1thf_D_2251thf   D225240SVFHFREIDVRELKEYHHHHTT-S-HHHHHHHaaaaalabxaaaaaaa
1tmo_*_2491tmo   -259274EMISKKLYDDKFIQGYHHHHTT-S-HHHHHHHaaaaalaxxaaaaaaa
2nap_A_2252nap   A235250VIINEELDNPRFWQRYHHHHTT-S-HHHHHHHaaaaalaxbaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aa6_*_2231aa6   *     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE N - 223
1dmr_*_2431dmr   *     PGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE D - 243
1dmr_*_2431dmr   *     OOXYGEN ATOM D - 243
1eu1_A_2431eu1   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE D - 243
1g8k_A_3061g8k   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE D - 306
1h0h_A_2411h0h   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE D - 241
1h0h_A_2411h0h   A     CACALCIUM ION F - 259
1n3l_A_2921n3l   A     GOLGLYCEROL Y - 292
1qle_C_531qle   C     PC2DI-STEAROYL-3-SN-PHOSPHATIDYLCHOLINE L - 55
1qle_C_531qle   C     PC2DI-STEAROYL-3-SN-PHOSPHATIDYLCHOLINE V - 58
1qle_C_531qle   C     PC2DI-STEAROYL-3-SN-PHOSPHATIDYLCHOLINE L - 59
1qle_C_531qle   C     PC2DI-STEAROYL-3-SN-PHOSPHATIDYLCHOLINE M - 62
1qle_C_531qle   C     PC2DI-STEAROYL-3-SN-PHOSPHATIDYLCHOLINE W - 65
1qle_C_531qle   C     PC2DI-STEAROYL-3-SN-PHOSPHATIDYLCHOLINE W - 66
1qle_C_531qle   C     PC2DI-STEAROYL-3-SN-PHOSPHATIDYLCHOLINE A - 67
1qle_C_531qle   C     PC2DI-STEAROYL-3-SN-PHOSPHATIDYLCHOLINE V - 69
1qle_C_531qle   C     PC2DI-STEAROYL-3-SN-PHOSPHATIDYLCHOLINE V - 70
1qle_C_531qle   C     PC2DI-STEAROYL-3-SN-PHOSPHATIDYLCHOLINE G - 73
1qle_C_531qle   C     PC2DI-STEAROYL-3-SN-PHOSPHATIDYLCHOLINE E - 74
1qle_C_531qle   C     PC2DI-STEAROYL-3-SN-PHOSPHATIDYLCHOLINE G - 76
1qle_C_531qle   C     PC2DI-STEAROYL-3-SN-PHOSPHATIDYLCHOLINE H - 78
1qle_C_531qle   C     PC2DI-STEAROYL-3-SN-PHOSPHATIDYLCHOLINE V - 82
1qle_C_531qle   C     PC2DI-STEAROYL-3-SN-PHOSPHATIDYLCHOLINE L - 86
1qle_C_531qle   C     PC2DI-STEAROYL-3-SN-PHOSPHATIDYLCHOLINE F - 90
1qle_C_531qle   C     PC2DI-STEAROYL-3-SN-PHOSPHATIDYLCHOLINE F - 93
1qle_C_531qle   C     PC2DI-STEAROYL-3-SN-PHOSPHATIDYLCHOLINE M - 99
1qle_C_531qle   C     PC2DI-STEAROYL-3-SN-PHOSPHATIDYLCHOLINE V - 102
1qle_C_531qle   C     PC2DI-STEAROYL-3-SN-PHOSPHATIDYLCHOLINE W - 106
1qle_C_531qle   C     PC2DI-STEAROYL-3-SN-PHOSPHATIDYLCHOLINE K - 110
1qle_C_531qle   C     PC2DI-STEAROYL-3-SN-PHOSPHATIDYLCHOLINE L - 113
1qnf_*_2441qnf   *     FADFLAVIN-ADENINE DINUCLEOTIDE S - 244
1qnf_*_2441qnf   *     FADFLAVIN-ADENINE DINUCLEOTIDE P - 245
1qnf_*_2441qnf   *     FADFLAVIN-ADENINE DINUCLEOTIDE L - 247
1qnf_*_2441qnf   *     FADFLAVIN-ADENINE DINUCLEOTIDE K - 248
1qnf_*_2441qnf   *     HDF8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE K - 248
1qnf_*_2441qnf   *     HDF8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE F - 249
1qsa_A_1381qsa   A     GOLGLYCEROL L - 155
1qsa_A_1381qsa   A     GOLGLYCEROL L - 158
1thf_D_2251thf   D     PO4PHOSPHATE ION S - 225
1thf_D_2251thf   D     PO4PHOSPHATE ION V - 226
1tmo_*_2491tmo   *     2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER D - 249
2nap_A_2252nap   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE D - 225

Clusters included in this Subclass
CLUSTER: HH.4.24
CLUSTER: HH.5.19
CLUSTER: HH.5.61
CLUSTER: HH.6.55