ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.22.1

Subclass Accession number: 4831
Subclass: 4.22.1

PSSM

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 8

Average sequence ID (%) : 30.1 +/- 27.0
Average RMSD (Å) : 0.412 +/- 0.064

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 90-135

rho (°): 315-360

Consensus Sequence:	XpGpXXXA
(φψ)-conformation:	aaepaeaa

Pattern:	[AIKLV]	[DES]	[ehmr]	[ity]	[G]	[HN]	[LT]	x	[AGST]	[AG]	[ACS]	[GIV]	[AGLP]	[CFILV]	[ae]	[ailm]	x	[aer]	[altv]	[ilv]	x
Conservation:	-0.634	0.417	-0.722	-0.381	3.265	1.823	0.274	-0.413	-0.036	1.000	0.395	-0.375	-0.682	-0.106	-0.502	-0.406	-1.002	-0.497	-0.504	-0.002	-0.913

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1e5m_A_339	1e5m	A	339	359	KSMTGHLLGGSGGIEAVATVM	HHHH-B-GGGHHHHHHHHHHH	aaaaexaeaaaaaaaaaaaaa
1hnj_A_269	1hnj	A	269	289	LDRHGNTSAASVPCALDEAVR	HHHH-B-GGGHHHHHHHHHHH	aaaaexaeaaaaaaaaaaaaa
1hzp_A_269	1hzp	A	269	289	IEHTGNTSAASIPLAMAELLT	HHHH-B-GGGHHHHHHHHHHH	aaaaexaeaaaaaaaaaaaaa
1j3n_A_333	1j3n	A	333	353	KSMIGHLLGAAGAVEAIATVQ	HHHH-B-GGGHHHHHHHHHHH	aaaaebaeaaaaaaaaaaaaa
1kas_*_335	1kas	-	335	355	KSMTGHLLGAAGAVESIYSIL	HHHH-B-GGGHHHHHHHHHHH	aaaaexaeaaaaaaaaaaaaa
1mzj_A_283	1mzj	A	283	303	AEDTGNTSSASVALALDRLVR	HHHH-B-TTHHHHHHHHHHHH	aaaaexaeaaaaaaaaaaaaa
1qlv_A_330	1qlv	A	336	356	LSEYGNLISACVLFIIDEVRK	HHHH-B-GGGHHHHHHHHHHH	aaaaexaeaaaaaaaaaaaaa
1ub7_A_271	1ub7	A	271	291	VDRYGNTSTASIPLALKEAVD	HHHH-B-GGGHHHHHHHHHHH	aaaaexaeaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1hnj_A_269	1hnj	A	MLCMALONYL-COENZYME A	N - 274
1hzp_A_269	1hzp	A	GOLGLYCEROL	H - 271
1hzp_A_269	1hzp	A	DAOLAURIC ACID	N - 274
1hzp_A_269	1hzp	A	DAOLAURIC ACID	S - 276
1hzp_A_269	1hzp	A	GOLGLYCEROL	L - 282
1hzp_A_269	1hzp	A	GOLGLYCEROL	A - 285
1hzp_A_269	1hzp	A	GOLGLYCEROL	E - 286
1hzp_A_269	1hzp	A	GOLGLYCEROL	L - 287
1hzp_A_269	1hzp	A	GOLGLYCEROL	T - 289
1mzj_A_283	1mzj	A	COACOENZYME A	N - 288
1mzj_A_283	1mzj	A	COACOENZYME A	S - 290
1qlv_A_330	1qlv	A	CSD3-SULFINOALANINE	N - 341
1qlv_A_330	1qlv	A	CSD3-SULFINOALANINE	I - 343
1qlv_A_330	1qlv	A	CSD3-SULFINOALANINE	S - 344
1qlv_A_330	1qlv	A	CSD3-SULFINOALANINE	V - 347
1ub7_A_271	1ub7	A	CEAS-HYDROXY-CYSTEINE	N - 276
1ub7_A_271	1ub7	A	CEAS-HYDROXY-CYSTEINE	S - 278
1ub7_A_271	1ub7	A	CEAS-HYDROXY-CYSTEINE	T - 279
1ub7_A_271	1ub7	A	CEAS-HYDROXY-CYSTEINE	A - 280

Clusters included in this Subclass

CLUSTER: HH.5.64