Logo
Information on SUBCLASS 4.4.1
Subclass Accession number: 2375
Subclass: 4.4.1 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 21

Average sequence ID (%) : 13.9 +/- 14.4
Average RMSD (Å) : 0.676 +/- 0.259

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: XXcXhpXX
(φψ)-conformation: aagabpaa
Pattern: [agiltv]xxxxx[adegknrst][dgkqs]x[ailv][depst]x[adeknqst][adekqt][AGILVY]x[adeknqrst]xx
Conservation:0.472-1.137-0.902-0.8320.072-0.628-0.2432.568-0.3541.9030.861-1.1120.428-0.2220.893-0.656-0.174-0.835-0.101
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1d8c_A_6321d8c   A642660IANWLRHGILTKEQVQASLHHHHHHTTSS-HHHHHHHHaaaaaaavabbaaaaaaaa
1dj0_A_2031dj0   A210228SLMEVGAHNQPESWIAELLHHHHHHTTSS-TTHHHHHHaaaaaaavabxaaaaaaaa
1f14_A_2071f14   A218236AIRLYERGDASKEDIDTAMHHHHHHTTSS-HHHHHHHHaaaaaaavabxaaaaaaaa
1h16_A_2801h16   A287305IERDLKAGKITEQEAQEMVHHHHHHTTSS-HHHHHHHHaaaaaaavabxaaaaaaaa
1h6k_A_5981h6k   A605623VDKMIRTQIVDCAAVANWIHHHHHHTTSS-HHHHHHHHaaaaaaavabbaaaaaaaa
1ire_B_681ire   B7795IHHGVRTGKIDLEELERRTHHHHHHTT-S-HHHHHHHHaaaaaaavabxaaaaaaaa
1is2_A_5711is2   A571589GGDFLEGSIITGAQLSQVNHHHHHHTTSS-HHHHHHHHaaaaaaalabxaaaaaaaa
1jj2_O_901jj2   O105123LRELRDEGTLSSSQYRDLYHHHHHHTTSS-HHHHHHHHaaaaaaagabxaaaaaaaa
1k7w_A_371k7w   A4866AKALEKAGILTKTELEKILHHHHHHTTSS-HHHHHHHHaaaaaaavabxaaaaaaaa
1kek_A_5601kek   A565583TAFFKLAGVLPFEKAVDLLHHHHHHSSSS-HHHHHHHHaaaaaaavabxaaaaaaaa
1l6s_A_2721l6s   A278296IKFAALAGAIDEEKVVLESHHHHHHTTSS-HHHHHHHHaaaaaaavabxaaaaaaaa
1mla_*_931mla   -96114YSALVCAGVIDFADAVRLVHHHHHHTTSS-HHHHHHHHaaaaaaavabxaaaaaaaa
1nh2_D_141nh2   D2341LDTLISDGRIEASLAMRVLHHHHHHTTSS-HHHHHHHHaaaaaaavabbaaaaaaaa
1nm2_A_991nm2   A101119ITAAVFAGVLDDTAALSLVHHHHHHTTSS-HHHHHHHHaaaaaaavabxaaaaaaaa
1nvp_D_101nvp   D1937LDELIQSQQITPQLALQVLHHHHHHTTSS-HHHHHHHHaaaaaaalabxaaaaaaaa
1o9p_A_41o9p   A725LQRRIETGELSPNAAIAQSHHHHHHTTSS-HHHHHHHHaaaaaaavabxaaaaaaaa
1ohl_A_2901ohl   A296314LHAAAEKGVVDLKTIAFESHHHHHHTTSS-HHHHHHHHaaaaaaavabbaaaaaaaa
1paq_A_6511paq   A659677LVSLYDNDIIEEDVIYKWWHHHHHHTTSS-HHHHHHHHaaaaaaavabbaaaaaaaa
1qi9_A_4651qi9   A477495AFGRQMLGIHYRFDGIQGLHHHHHHTTS--HHHHHHHHaaaaaaagabbaaaaaaaa
1t2d_A_1991t2d   A199217LQEFINNKLISDAELEAIFHHHHHHTTSS-HHHHHHHHaaaaaaavabxaaaaaaaa
2ahj_B_722ahj   B8199ATLMVEKGILTQDELESLAHHHHHHTTSS-HHHHHHHHaaaaaaavabbaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1d8c_A_6321d8c   A     MGMAGNESIUM ION A - 633
1d8c_A_6321d8c   A     GLVGLYOXYLIC ACID A - 633
1d8c_A_6321d8c   A     MSESELENOMETHIONINE R - 636
1d8c_A_6321d8c   A     MSESELENOMETHIONINE I - 637
1d8c_A_6321d8c   A     MSESELENOMETHIONINE S - 638
1d8c_A_6321d8c   A     MSESELENOMETHIONINE Q - 640
1d8c_A_6321d8c   A     MSESELENOMETHIONINE H - 641
1d8c_A_6321d8c   A     MSESELENOMETHIONINE A - 643
1d8c_A_6321d8c   A     MSESELENOMETHIONINE N - 644
1d8c_A_6321d8c   A     MSESELENOMETHIONINE W - 645
1d8c_A_6321d8c   A     MSESELENOMETHIONINE R - 647
1d8c_A_6321d8c   A     MSESELENOMETHIONINE H - 648
1d8c_A_6321d8c   A     MSESELENOMETHIONINE A - 658
1d8c_A_6321d8c   A     MSESELENOMETHIONINE S - 659
1d8c_A_6321d8c   A     MSESELENOMETHIONINE L - 660
1d8c_A_6321d8c   A     MSESELENOMETHIONINE E - 661
1ire_B_681ire   B     CSD3-SULFINOALANINE Y - 68
1jj2_O_901jj2   O     MGMAGNESIUM ION S - 90
1jj2_O_901jj2   O     MGMAGNESIUM ION K - 91
1l6s_A_2721l6s   A     DSB4,7-DIOXOSEBACIC ACID S - 272
1l6s_A_2721l6s   A     DSB4,7-DIOXOSEBACIC ACID G - 273
1ohl_A_2901ohl   A     PBG3-[5-(AMINOMETHYL)-4-(CARBOXYMETHYL)-1H-PYRROL-3-YL] PROPANOIC ACID S - 290
1ohl_A_2901ohl   A     PBG3-[5-(AMINOMETHYL)-4-(CARBOXYMETHYL)-1H-PYRROL-3-YL] PROPANOIC ACID G - 291
1paq_A_6511paq   A     MSESELENOMETHIONINE L - 655
1paq_A_6511paq   A     MSESELENOMETHIONINE L - 659
1paq_A_6511paq   A     MSESELENOMETHIONINE L - 662
1paq_A_6511paq   A     MSESELENOMETHIONINE I - 668
1paq_A_6511paq   A     MSESELENOMETHIONINE V - 672
1paq_A_6511paq   A     MSESELENOMETHIONINE I - 673
1paq_A_6511paq   A     MSESELENOMETHIONINE W - 676
1paq_A_6511paq   A     MSESELENOMETHIONINE W - 677
1qi9_A_4651qi9   A     VO4VANADATE ION R - 480
1qi9_A_4651qi9   A     VO4VANADATE ION I - 485
1qi9_A_4651qi9   A     VO4VANADATE ION H - 486
2ahj_B_722ahj   B     CSD3-SULFINOALANINE Y - 72
2ahj_B_722ahj   B     NONITROGEN OXIDE Y - 72
2ahj_B_722ahj   B     DIO1,4-DIETHYLENE DIOXIDE Y - 72
2ahj_B_722ahj   B     CSD3-SULFINOALANINE R - 75
2ahj_B_722ahj   B     CSD3-SULFINOALANINE Y - 76
2ahj_B_722ahj   B     FEFE (III) ION Y - 76
2ahj_B_722ahj   B     NONITROGEN OXIDE Y - 76
2ahj_B_722ahj   B     DIO1,4-DIETHYLENE DIOXIDE Y - 76

Clusters included in this Subclass
CLUSTER: HH.4.107
CLUSTER: HH.5.53
CLUSTER: HH.6.4