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Information on SUBCLASS 4.4.2
Subclass Accession number: 9043
Subclass: 4.4.2 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 12.6 +/- 13.5
Average RMSD (Å) : 1.029 +/- 0.315

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 90-135 rho (°): 315-360
Consensus Sequence: XhXhXpXX
(φψ)-conformation: aalbabaa
Pattern: [hil][aktv]xx[aflv][eqrw][AENR][alv][EGN][afil]x[DPRST]x[DEGNS][adenqr][AILVY]x[aenst][fhlm][ilw]
Conservation:0.683-0.071-1.307-0.845-0.444-0.3700.7240.9992.0670.480-1.9030.244-1.6551.373-0.7440.698-0.211-0.164-0.1130.560
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1af7_*_471af7   -5473LVRRLRALGLDDFGRYLSMLHHHHHHHHT---HHHHHHHHaaaaaaaavbabaaaaaaaa
1gwu_A_1451gwu   A148167LKDSFRNVGLNRSSDLVALSHHHHHHHHT---HHHHHHHHaaaaaaaagbaxaaaaaaaa
1i50_B_2821i50   B282301IVIIFRALGIIPDGEILEHIHHHHHHHTT--SHHHHHHHHaaaaaaaagbaxaaaaaaaa
1jgt_A_3091jgt   A309328LPYAVWASESVDPDIIEYLLHHHHHHHH----HHHHHHHHaaaaaaaalbaxaaaaaaaa
1jhf_A_281jhf   A2847RAEIAQRLGFRSPNAAEEHLHHHHHHHTT-SSHHHHHHHHaaaaaaaavxabaaaaaaaa
1t7p_A_5051t7p   A506525HTKNQIAAELPTRDNAKTFIHHHHHHHHT-S-HHHHHHHHaaaaaaaavbabaaaaaaaa
1ur3_M_2241ur3   M230249LAVVAEELNAGSIEQVVNAWHHHHHHHTT-S-HHHHHHHHaaaaaaaalxabaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gwu_A_1451gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 148
1gwu_A_1451gwu   A     CACALCIUM ION L - 148
1gwu_A_1451gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 151
1gwu_A_1451gwu   A     CACALCIUM ION S - 151
1gwu_A_1451gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 152
1gwu_A_1451gwu   A     CACALCIUM ION F - 152
1gwu_A_1451gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 163
1gwu_A_1451gwu   A     CACALCIUM ION L - 163
1gwu_A_1451gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 166
1gwu_A_1451gwu   A     CACALCIUM ION L - 166
1gwu_A_1451gwu   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 167
1gwu_A_1451gwu   A     CACALCIUM ION S - 167
1jgt_A_3091jgt   A     CMAN2-(CARBOXYETHYL)-L-ARGININE I - 323
1jgt_A_3091jgt   A     CMAN2-(CARBOXYETHYL)-L-ARGININE Y - 326
1jgt_A_3091jgt   A     CMAN2-(CARBOXYETHYL)-L-ARGININE L - 327
1jgt_A_3091jgt   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER P - 329
1jgt_A_3091jgt   A     CMAN2-(CARBOXYETHYL)-L-ARGININE P - 329
1jgt_A_3091jgt   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER L - 330
1jgt_A_3091jgt   A     CMAN2-(CARBOXYETHYL)-L-ARGININE L - 330
1jgt_A_3091jgt   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER L - 333
1jgt_A_3091jgt   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER Y - 334
1t7p_A_5051t7p   A     DG32'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE I - 505
1t7p_A_5051t7p   A     DG32'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE H - 506
1t7p_A_5051t7p   A     DG32'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE R - 518
1t7p_A_5051t7p   A     2DA2',3'-DIDEOXYADENOSINE-5'-MONOPHOSPHATE K - 522
1t7p_A_5051t7p   A     DG32'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE K - 522
1t7p_A_5051t7p   A     MGMAGNESIUM ION K - 522
1t7p_A_5051t7p   A     DG32'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE T - 523
1t7p_A_5051t7p   A     DG32'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE Y - 526
1t7p_A_5051t7p   A     DG32'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE G - 527
1ur3_M_2241ur3   M     MSESELENOMETHIONINE V - 233
1ur3_M_2241ur3   M     MSESELENOMETHIONINE L - 237
1ur3_M_2241ur3   M     MSESELENOMETHIONINE V - 245
1ur3_M_2241ur3   M     MSESELENOMETHIONINE V - 246
1ur3_M_2241ur3   M     MSESELENOMETHIONINE A - 248
1ur3_M_2241ur3   M     MSESELENOMETHIONINE W - 249

Clusters included in this Subclass
CLUSTER: HH.5.31