ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 5.10.2

Subclass Accession number: 9114
Subclass: 5.10.2

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 3

Average sequence ID (%) : 6.9 +/- 7.4
Average RMSD (Å) : 1.333 +/- 0.231

Consensus geometry

d (Å): 11

delta (°): 90-135

theta (°): 90-135

rho (°): 315-360

Consensus Sequence:	XXXXphXXX
(φψ)-conformation:	aapaabpaa

Pattern:	x	x	x	x	[HIL]	[AIK]	[IPT]	x	x	x	[KL]	x	[NP]	[QST]	[IW]	x	x	[ADG]	[DEQ]	x	[LV]	[AKQ]	[FGI]	[AG]	[GIM]	[ASV]	[AKV]	x	x
Conservation:	-0.874	-0.054	0.745	-0.601	-0.327	-1.011	-0.601	-1.011	-0.054	-0.874	0.751	-0.191	2.114	0.493	0.630	-0.191	-0.191	-0.054	1.859	-0.601	1.854	0.219	-1.147	2.391	-1.011	-0.054	-0.464	-0.601	-1.147

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
153l_*_110	153l	-	120	148	LINFIKTIQKKFPSWTKDQQLKGGISAYN	HHHHHHHHHHH-TTS-HHHHHHHHHHHHH	aaaaaaaaaaabaaxxaaaaaaaaaaaaa
1dqs_A_271	1dqs	A	271	299	HSIGHAIEAILTPQILHGECVAIGMVKEA	HHHHHHHHHHHTTTS-HHHHHHHHHHHHH	aaaaaaaaaaaxwabxaaaaaaaaaaaaa
1mn1_*_84	1mn1	-	86	114	SVNNLIPFMQKHNTISAADLVQFAGAVAL	HHHHHHHHHHHSTTS-HHHHHHHHHHHHH	aaaaaaaaaaaxaabxaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1dqs_A_271	1dqs	A	ZNZINC ION	H - 271
1dqs_A_271	1dqs	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	H - 271
1dqs_A_271	1dqs	A	CRB[1R-(1ALPHA,3BETA,4ALPHA,5BETA)]-5-(PHOSPHONOMETHYL)-1,3,4-TRIHYDROXYCYCLOHEXANE-1-CARBOXYLIC ACID	H - 271
1dqs_A_271	1dqs	A	ZNZINC ION	H - 275
1dqs_A_271	1dqs	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	H - 275
1dqs_A_271	1dqs	A	CRB[1R-(1ALPHA,3BETA,4ALPHA,5BETA)]-5-(PHOSPHONOMETHYL)-1,3,4-TRIHYDROXYCYCLOHEXANE-1-CARBOXYLIC ACID	H - 275
1dqs_A_271	1dqs	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	E - 278
1dqs_A_271	1dqs	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	L - 286
1dqs_A_271	1dqs	A	ZNZINC ION	H - 287
1dqs_A_271	1dqs	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	H - 287
1dqs_A_271	1dqs	A	CRB[1R-(1ALPHA,3BETA,4ALPHA,5BETA)]-5-(PHOSPHONOMETHYL)-1,3,4-TRIHYDROXYCYCLOHEXANE-1-CARBOXYLIC ACID	H - 287
1dqs_A_271	1dqs	A	ZNZINC ION	V - 291
1dqs_A_271	1dqs	A	CRB[1R-(1ALPHA,3BETA,4ALPHA,5BETA)]-5-(PHOSPHONOMETHYL)-1,3,4-TRIHYDROXYCYCLOHEXANE-1-CARBOXYLIC ACID	V - 291
1mn1_*_84	1mn1	*	NAGN-ACETYL-D-GLUCOSAMINE	I - 91
1mn1_*_84	1mn1	*	NAGN-ACETYL-D-GLUCOSAMINE	M - 94
1mn1_*_84	1mn1	*	NAGN-ACETYL-D-GLUCOSAMINE	Q - 95
1mn1_*_84	1mn1	*	NAGN-ACETYL-D-GLUCOSAMINE	K - 96
1mn1_*_84	1mn1	*	NAGN-ACETYL-D-GLUCOSAMINE	H - 97
1mn1_*_84	1mn1	*	NAGN-ACETYL-D-GLUCOSAMINE	N - 98
1mn1_*_84	1mn1	*	NAGN-ACETYL-D-GLUCOSAMINE	T - 99
1mn1_*_84	1mn1	*	NAGN-ACETYL-D-GLUCOSAMINE	I - 100
1mn1_*_84	1mn1	*	NAGN-ACETYL-D-GLUCOSAMINE	S - 101
1mn1_*_84	1mn1	*	NAGN-ACETYL-D-GLUCOSAMINE	A - 102

Clusters included in this Subclass