Information on SUBCLASS 5.2.1 |
Subclass Accession number: 4876
Subclass: 5.2.1 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 52 Average sequence ID (%) : 14.1 +/- 15.8 Average RMSD (Å) : 0.848 +/- 0.339 Consensus geometry
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Consensus Sequence: | XXXhphpXX |
(φψ)-conformation: | aabaappaa |
Pattern: | [acfilmpvy] | x | x | [afilvy] | x | [adekqrst] | x | x | [dhknps] | [adegknqrst] | [agilmvwy] | [degnpst] | x | x | [adegqrst] | [afiklmv] | x |
Conservation: | -0.260 | -0.535 | -1.636 | 1.103 | -0.073 | 0.168 | -0.638 | -0.221 | 2.467 | 0.230 | 0.301 | 1.154 | -1.217 | -0.710 | 0.120 | 0.789 | -1.040 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
153l_*_110 | 153l | - | 124 | 140 | IKTIQKKFPSWTKDQQL | HHHHHHH-TTS-HHHHH | aaaaaaabaaxxaaaaa |
1apx_A_74 | 1apx | A | 81 | 97 | LEPIKEQFPIVSYADFY | HHHHHHT-TTS-HHHHH | aaaaaaabaaxxaaaaa |
1bh6_A_220 | 1bh6 | A | 231 | 247 | AALILSKYPTLSASQVR | HHHHHHHSTT--HHHHH | aaaaaaabaaxxaaaaa |
1bja_A_34 | 1bja | A | 34 | 50 | AAEVREVHPDLGNAVVN | HHHHHHT-TTS-HHHHH | aaaaaaabaabxaaaaa |
1coy_*_128 | 1coy | - | 128 | 144 | RNYFEEILPSVDSNEMY | HHHHHHH-TTS-HHHHH | aaaaaaabaaxxaaaaa |
1crl_*_355 | 1crl | - | 359 | 375 | REYFKQSFVHASDAEID | HHHHHHH-TT--HHHHH | aaaaaaabaaxxaaaaa |
1cvu_A_296 | 1cvu | A | 313 | 329 | CDILKQEHPEWGDEQLF | HHHHHHH-TT--HHHHH | aaaaaaabaaxbaaaaa |
1dj8_A_52 | 1dj8 | A | 62 | 78 | IVQACTQDKQANFKDKV | HHHHHHTTTTSBHHHHH | aaaaaaabaapxaaaaa |
1dnp_A_359 | 1dnp | A | 363 | 379 | ERYFMSQLIDGDLAANN | HHHHHTT-TT--HHHHH | aaaaaaaxaapbaaaaa |
1ea5_A_349 | 1ea5 | A | 353 | 369 | MSGVKLSVPHANDLGLD | HHHHHHHSTT--HHHHH | aaaaaaabaaxxaaaaa |
1eyv_A_87 | 1eyv | A | 96 | 112 | SVWELLHAADVPEPVVV | HHHHHHH-TTS-HHHHH | aaaaaaabaaxwaaaaa |
1f5a_A_253 | 1f5a | A | 253 | 269 | VARTCQLYPNAIASTLV | HHHHHHHSTT--HHHHH | aaaaaaabaaxbaaaaa |
1fcq_A_127 | 1fcq | A | 134 | 150 | VEVVRREHPFWDDQRVE | HHHHHHH-TTS-HHHHH | aaaaaaabaaxxaaaaa |
1fl1_A_154 | 1fl1 | A | 154 | 170 | AEWVVSRFSSVSKSERA | HHHHHHTBTTS-HHHHH | aaaaaaaxaabxaaaaa |
1fpz_A_146 | 1fpz | A | 152 | 168 | ACLLLYLSDTISPEQAI | HHHHHHH-SS--HHHHH | aaaaaaabaaxxaaaaa |
1gci_*_220 | 1gci | - | 231 | 247 | AALVKQKNPSWSNVQIR | HHHHHHH-TT--HHHHH | aaaaaaabaaxxaaaaa |
1gqi_A_459 | 1gqi | A | 465 | 481 | AFGRMAWDHQISAATAA | HHHHHHH-TT--HHHHH | aaaaaaabaaxxaaaaa |
1iyn_A_71 | 1iyn | A | 77 | 93 | LKPIKDKYSGVTYADLF | HHHHHHH-TTS-HHHHH | aaaaaaabaabxaaaaa |
1jdr_A_86 | 1jdr | A | 92 | 108 | LEPIHKEFPWISSGDLF | HHHHHHH-TTS-HHHHH | aaaaaaabaaxxaaaaa |
1jq6_A_177 | 1jq6 | A | 177 | 193 | PEWVTQRFPDLTAADRD | HHHHHTT-SS--HHHHH | aaaaaaabaapxaaaaa |
1js3_A_148 | 1js3 | A | 164 | 180 | VRRLQAASPGLTQGAVL | HHHHHHHSTT--HHHHH | aaaaaaabaaxxaaaaa |
1jwy_A_536 | 1jwy | A | 539 | 555 | LLDEQSVFPNATDNTLI | HHHHHHTSTT--HHHHH | aaaaaaaxwaxbaaaaa |
1k78_A_93 | 1k78 | A | 99 | 115 | IAEYKRQNPTMFAWEIR | HHHHHHH-TT--HHHHH | aaaaaaabaapxaaaaa |
1kjw_A_655 | 1kjw | A | 655 | 671 | LENVLEINKRITEEQAR | HHHHHHH-TTS-HHHHH | aaaaaaabaabxaaaaa |
1kk8_A_529 | 1kk8 | A | 532 | 548 | ILEEECMFPKADDKSFQ | HHHHHTT-TT--HHHHH | aaaaaaabaaxbaaaaa |
1kxp_D_228 | 1kxp | D | 236 | 252 | LIKLAQKVPTADLEDVL | HHHHHHH-TTS-HHHHH | aaaaaaabaaxxaaaaa |
1kxp_D_37 | 1kxp | D | 45 | 61 | LVLYSRKFPSGTFEQVS | HHHHHHH-TT--HHHHH | aaaaaaabaaxxaaaaa |
1kxp_D_415 | 1kxp | D | 423 | 439 | AERLKAKLPDATPKELA | HHHHHHH-TTS-HHHHH | aaaaaaabaapxaaaaa |
1llf_A_355 | 1llf | A | 359 | 375 | RAYFKQSFIHASDAEID | HHHHHHH-TT--HHHHH | aaaaaaabaaxxaaaaa |
1mee_A_220 | 1mee | A | 231 | 247 | AALILSKHPTWTNAQVR | HHHHHHH-TT--HHHHH | aaaaaaabaaxxaaaaa |
1mn2_*_84 | 1mn2 | - | 90 | 106 | LIPFMQKHNTISAADLV | HHHHHHHSTTS-HHHHH | aaaaaaaxaabxaaaaa |
1n3l_A_75 | 1n3l | A | 75 | 91 | DLHAYLDNMKAPWELLE | HHHHHHTTTTS-HHHHH | aaaaaaabaappaaaaa |
1n5m_A_356 | 1n5m | A | 360 | 376 | LAGVRIGVPQASDLAAE | HHHHHHHSTT--HHHHH | aaaaaaabaaxxaaaaa |
1n5u_A_208 | 1n5u | A | 216 | 232 | VARLSQRFPKAEFAEVS | HHHHHHH-TTS-HHHHH | aaaaaaabaaxxaaaaa |
1n5u_A_323 | 1n5u | A | 331 | 347 | LYEYARRHPDYSVVLLL | HHHHHHT-TTS-HHHHH | aaaaaaabaabxaaaaa |
1n5u_A_400 | 1n5u | A | 408 | 424 | LVRYTKKVPQVSTPTLV | HHHHHHH-TTS-HHHHH | aaaaaaabaaxpaaaaa |
1n5u_A_518 | 1n5u | A | 529 | 545 | LVELVKHKPKATKEQLK | HHHHHHH-TT--HHHHH | aaaaaaabaaxxaaaaa |
1np7_A_373 | 1np7 | A | 377 | 393 | AEWFESCLIDYDVCSNW | HHHHHHH-TT--HHHHH | aaaaaaaxaapbaaaaa |
1nrw_A_115 | 1nrw | A | 123 | 139 | LDRFRSANPEADLSVLK | HHHHHHH-TTS-HHHHH | gaaaaaabaaxxaaaaa |
1o6e_A_159 | 1o6e | A | 159 | 175 | LAWVLKHFSDLEPSIAA | HHHHHHT-TTS-HHHHH | aaaaaaabaaxxaaaaa |
1oaf_A_74 | 1oaf | A | 81 | 97 | LEPLKAEFPILSYADFY | HHHHHHT-TTS-HHHHH | aaaaaaabaaxxaaaaa |
1owl_A_368 | 1owl | A | 371 | 387 | EQFFMQHLVDGDLAANN | HHHHHTT-TT--HHHHH | aaaaaaaxaapbaaaaa |
1ows_B_2 | 1ows | B | 6 | 22 | NNMIECTVPARSWWDFA | HHHHHHH-TTS-THHHH | aaaaaaabaabbaaaaa |
1p0i_A_347 | 1p0i | A | 351 | 367 | QEGLKIFFPGVSEFGKE | HHHHHHH-TT--HHHHH | aaaaaaabaaxpaaaaa |
1q4g_A_296 | 1q4g | A | 313 | 329 | CDLLKAEHPTWGDEQLF | HHHHHHH-TT--HHHHH | aaaaaaabaaxxaaaaa |
1qst_A_60 | 1qst | A | 70 | 86 | KNIFSRQLPKMPKEYIV | HHHHHHH-TTS-HHHHH | aaaaaaabaaxpaaaaa |
1r0r_E_220 | 1r0r | E | 231 | 247 | AALILSKHPNLSASQVR | HHHHHHHSTT--HHHHH | aaaaaaabaaxxaaaaa |
1r64_A_384 | 1r64 | A | 395 | 411 | YTLLLEANPNLTWRDVQ | HHHHHHH-TT--HHHHH | aaaaaaabaapxaaaaa |
1s6b_A_2 | 1s6b | A | 6 | 22 | KNMIQCTVPKRSWWDFA | HHHHHHH-TTS-THHHH | aaaaaaabaabxaaaaa |
1sup_*_220 | 1sup | - | 231 | 247 | AALILSKHPNWTNTQVR | HHHHHHH-TT--HHHHH | aaaaaaabaaxxaaaaa |
1ucr_A_24 | 1ucr | A | 24 | 40 | FNDFTDLFPDMKQREVK | HHHHHHH-TTS-HHHHH | aaaaaaabaabxaaaaa |
6pax_A_78 | 6pax | A | 84 | 100 | IAQYKQECPSIFAWEIR | HHHHHHH-TT--HHHHH | aaaaaaabaaxxaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1bh6_A_220 | 1bh6 | A | ACTACTIVE SITE. | S - 221 |
1gqi_A_459 | 1gqi | A | AC4EDO BINDING SITE FOR CHAIN A | R - 468 |
1gqi_A_459 | 1gqi | A | AC2EDO BINDING SITE FOR CHAIN A | W - 471 |
1gqi_A_459 | 1gqi | A | AC4EDO BINDING SITE FOR CHAIN A | I - 475 |
Clusters included in this Subclass |
CLUSTER: HH.4.11 |
CLUSTER: HH.5.200 |
CLUSTER: HH.5.202 |
CLUSTER: HH.5.5 |
CLUSTER: HH.6.1 |
CLUSTER: HH.6.224 |
CLUSTER: HH.6.23 |
CLUSTER: HH.7.120 |
CLUSTER: HH.7.19 |
CLUSTER: HH.8.19 |