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Information on SUBCLASS 8.20.1
Subclass Accession number: 5049
Subclass: 8.20.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0016661 (>50 %)  GO:0016662 (>50 %)  GO:0030151 (>75 %)  GO:0046914 (>75 %)  GO:0050626 (>50 %)  
SCOP : 53705 (>75 %)  53706 (>75 %)  53707 (>75 %)  
Number of loops: 3

Average sequence ID (%) : 48.7 +/- 8.9
Average RMSD (Å) : 0.367 +/- 0.115

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: XphGWXhXpHXX
(φψ)-conformation: aabbapppalaa
Pattern: [P][IMY][K][NT]x[EQ][IV][G][W][NV][AI][EP][DET][H][EG][AS][FY][AP][GY][LM][AEK][AQ][L][K][AE][K]
Conservation:1.428-0.8040.608-0.321-1.1680.029-0.0031.0183.067-1.057-0.807-0.333-0.7131.838-0.667-0.4050.547-0.590-0.716-0.129-0.895-0.7310.1980.608-0.6080.608
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dms_*_1881dms   -188213PIKTSQIGWVIPEHGAYPGLEALKAKHHHHTT--SSB---THHHHHHHHHHHaaaaaabbaxxxalaaaaaaaaaaaa
1eu1_A_1881eu1   A188213PMKTNEIGWVIPDHGAYAGMKALKEKHHHHTT--SSB---HHHHHHHHHHHHaaaaaabbaxxxalaaaaaaaaaaaa
1tmo_*_1901tmo   -190215PYKNLQVGWNAETHESFAYLAQLKEKHHHHTS--SSB---THHHHHHHHHHHaaaaaabbabpxavaaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dms_*_1881dms   *     PGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE K - 190
1dms_*_1881dms   *     PGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE T - 191
1dms_*_1881dms   *     PGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE S - 192
1dms_*_1881dms   *     PGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE Q - 193
1dms_*_1881dms   *     PGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE I - 194
1dms_*_1881dms   *     MM4MOLYBDENUM (IV) OXIDE W - 196
1eu1_A_1881eu1   A     CSD3-SULFINOALANINE P - 188
1eu1_A_1881eu1   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE K - 190
1eu1_A_1881eu1   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE T - 191
1eu1_A_1881eu1   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE N - 192
1eu1_A_1881eu1   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE E - 193
1eu1_A_1881eu1   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE I - 194
1eu1_A_1881eu1   A     OXBOUND OXYGEN W - 196
1eu1_A_1881eu1   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID W - 196
1tmo_*_1901tmo   *     2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER K - 192
1tmo_*_1901tmo   *     2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER N - 193
1tmo_*_1901tmo   *     2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER L - 194
1tmo_*_1901tmo   *     2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER Q - 195
1tmo_*_1901tmo   *     2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER V - 196
1tmo_*_1901tmo   *     2MOMOLYBDENUM (IV)OXIDE ION W - 198

Clusters included in this Subclass
CLUSTER: HH.10.60