Information on SUBCLASS 8.6.1 |
Subclass Accession number: 5034
Subclass: 8.6.1 Type: HH alpha-alpha DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 27.5 +/- 30.4 Average RMSD (Å) : 0.950 +/- 0.569 Consensus geometry
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Consensus Sequence: | hXphchpXXppX |
(φψ)-conformation: | aabaapppppaa |
Pattern: | [FIV] | [LT] | [AKQ] | [AGV] | [EF] | [NS] | [APS] | x | [AGV] | [ER] | [ADV] | [KL] | [DNST] | [ad] | [AGKT] | [DE] | [IT] |
Conservation: | 0.530 | 0.223 | -0.211 | -0.739 | 0.153 | 1.379 | -0.205 | -0.310 | -0.640 | 1.208 | -1.284 | -0.287 | -0.099 | -1.353 | -1.291 | 2.365 | 0.561 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bu3_*_66 | 1bu3 | - | 66 | 82 | FLQVFSAGARALTDAET | HHHHHSTT-----HHHH | aaaaabaaxxxxxaaaa |
1exm_A_24 | 1exm | A | 34 | 50 | VTAAENPNVEVKDYGDI | HHHHH-TT-----HHHH | aaaaabaaxxxbxaaaa |
1rwy_A_66 | 1rwy | A | 66 | 82 | ILKGFSSDARDLSAKET | HHHHH-TT-----HHHH | aaaaabaaxxxxxaaaa |
5pal_*_66 | 5pal | - | 66 | 82 | VLKGFSAHGRDLNDTET | HHHHH-TT-----HHHH | aaaaabaaxbxxxaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1bu3_*_66 | 1bu3 | * | CACALCIUM ION | G - 89 |
1exm_A_24 | 1exm | A | MGMAGNESIUM ION | K - 24 |
1exm_A_24 | 1exm | A | GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | K - 24 |
1exm_A_24 | 1exm | A | MGMAGNESIUM ION | T - 25 |
1exm_A_24 | 1exm | A | GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | T - 25 |
1exm_A_24 | 1exm | A | MGMAGNESIUM ION | T - 26 |
1exm_A_24 | 1exm | A | GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | T - 26 |
1exm_A_24 | 1exm | A | GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | L - 27 |
1exm_A_24 | 1exm | A | MGMAGNESIUM ION | Y - 47 |
1exm_A_24 | 1exm | A | GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | Y - 47 |
Clusters included in this Subclass |
CLUSTER: HH.7.98 |