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Information on SUBCLASS 1.3.1
Subclass Accession number: 1021
Subclass: 1.3.1 PSSM
Type: EH beta-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 71

Average sequence ID (%) : 9.4 +/- 12.4
Average RMSD (Å) : 0.417 +/- 0.178

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: hXXpX
(φψ)-conformation: bpaaa
Pattern: xx[acfgiklmtv][adegnpqst]x[adeknqrst]x[afilmvwy]xx[acfgilmvy]
Conservation:-0.378-0.667-0.4810.225-0.7742.348-0.3611.291-0.250-1.0700.117
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8h_*_2531a8h   -255265HLIGKDILKPHEEEEGGGHHHHbbbbaaaaaaa
1amf_*_41amf   -717VFAAASLTNAMEEEEGGGHHHHbbbpaaaaaaa
1aop_*_2721aop   -275285GYLPLEHTLAVEEEEGGGHHHHebbxaaaaaaa
1atg_*_31atg   -515VVTATNFLGTLEEEEGGGHHHHbbbpaaaaaaa
1ayx_*_3871ayx   -387397ITINKINYDFFEEEEGGGHHHHbbbxaaaaaaa
1az9_*_1061az9   -106116RALAFSEINQQEEEEGGGHHHHbbbxaaaaaaa
1b65_A_1031b65   A104114VITNTHGIGMAEEEEGGGHHHHbbbxaaaaaaa
1cbf_*_2191cbf   -221231VRTTVKDLDDAEEEEGGGHHHHbbbbaaaaaaa
1cjw_A_1551cjw   A158168LMCEDALVPFYEEE-GGGHHHHbbbxaaaaaaa
1crz_A_1071crz   A113123YKVNKQWLRYAEEE-GGGHHHHbbbxaaaaaaa
1e19_A_2911e19   A293303IIAHLEKAVEAEEEEGGGHHHHbbbxaaaaaaa
1e3m_A_701e3m   A7079.GIPYHAVENY.EEEGGGHHHH.bbxaaaaaaa
1ewq_A_721ewq   A7281.GIPLRAFEAY.EEEGGGHHHH.bbxaaaaaaa
1ezv_B_871ezv   B91101ATFLKDDLPYYEEEEGGGHHHHbbbxaaaaaaa
1f8f_A_3431f8f   A344354KFYAFDEINQAEEEEGGGHHHHbxbxaaaaaaa
1h2b_A_3311h2b   A332342DIHKLDEINDVEEEEGGGHHHHbxbxaaaaaaa
1h3f_A_1901h3f   A191201EMGGTDQRFNLEEEEGGGHHHHbxbxaaaaaaa
1h4v_B_4041h4v   B405415VRLSREEVPGYEEEEGGGHHHHbbbxaaaaaaa
1hc7_A_3711hc7   A371380.TLPLAALPEA.EEEGGGHHHH.xbxaaaaaaa
1het_A_3461het   A348358HVLPFEKINEGEEEEGGGHHHHbbbxaaaaaaa
1hr6_B_1071hr6   B112122AKSLQEDIPKAEEEEGGGHHHHbbbxaaaaaaa
1hs6_A_3061hs6   A307317TNKTWDHFWLNEESSGGGHHHHbxabaaaaaaa
1hsj_A_591hsj   A6070IFWAHDRFGGYEEEETTTHHHHbbbxaaaaaaa
1htr_B_2231htr   B223233LTVPQQYMSALEEEEGGGHHHHxxbpaaaaaaa
1i2a_A_1041i2a   A105115FIAQADLMPLIEEEEGGGHHHHbbbpaaaaaaa
1iib_A_341iib   A3747EAFPETLAGEKEEEEGGGHHHHbbbxaaaaaaa
1iz0_A_1731iz0   A173183EAATYAEVPEREEEEGGGHHHHbbbxaaaaaaa
1iz0_A_2731iz0   A275285PVFPFAEAEAAEEEEGGGHHHHwbbxaaaaaaa
1j1u_A_1661j1u   A167177AVGGMEQRKIHEEEEGGGHHHHbbbxaaaaaaa
1jax_A_1741jax   A178188DAGPLSNSRLVEEESGGGHHHHxaexaaaaaaa
1jil_A_1871jil   A190200QVGGSDQWGNIEEEEGGGHHHHbbbxaaaaaaa
1kbl_A_2891kbl   A289297..QPITQLEND..EEGGGHHHH..xxaaaaaaa
1kbl_A_8511kbl   A852862VSCSPFRVPIAEEE-GGGHHHHbbbxaaaaaaa
1kfs_A_8831kfs   A886896FEVHKDDVDAVEEEETTTHHHHbbbxaaaaaaa
1knw_A_1661knw   A166174..IWYTDLPAA..EEGGGHHHH..xpaaaaaaa
1kqr_A_2051kqr   A206216YIIPREEESTCEEEEGGGHHHHbbbxaaaaaaa
1l0l_A_951l0l   A99109IKALSKDLPKAEEEEGGGHHHHbxbpaaaaaaa
1l0l_B_1051l0l   B109119VECLRDDVDILEEEEGGGHHHHbbbxaaaaaaa
1l6s_A_531l6s   A5363MRIPEKHLAREEEEEGGGHHHHbxxxaaaaaaa
1lar_A_15891lar   A15891597..VPARNLYAH..EEGGGHHHH..bxaaaaaaa
1m45_A_211m45   A2130.AIAKDSLGDY.EEEGGGHHHH.bbpaaaaaaa
1mw7_A_1721mw7   A175185IRGDYNSFKLLEEEEGGGHHHHbbbpaaaaaaa
1n3l_A_1811n3l   A182192QFGGIDQRKIFEEEEGGGHHHHbbbxaaaaaaa
1ne2_A_1391ne2   A141151SIGNAKARDFLEEEEGGGHHHHbbbpaaaaaaa
1nk4_A_8311nk4   A834844LEAPKEEMERLEEEEGGGHHHHbbbwaaaaaaa
1nnj_A_1131nnj   A115125ELISTDQVLPYEEEEGGGHHHHbbbxaaaaaaa
1nzj_A_1871nzj   A188198IVRGADLIEPTEEEEGGGHHHHbbbxaaaaawa
1o98_A_3281o98   A330340RIAETEKYPHVEEEEGGGHHHHbbbxaaaaaaa
1p35_A_1021p35   A104114SCQNGSVLKSKEEEEGGGHHHHbbbxaaaaaaa
1pe1_A_12381pe1   A12381246..LPLSQLEGI..EEGGGHHHH..xpaaaaaaa
1pfv_A_2881pfv   A291301HFIGKDIVYFHEEEEGGGHHHHbxbxaaaaaaa
1pie_A_3531pie   A356366ALVAHDNVSAFEEEEGGGHHHHbbbpaaaaaaa
1q2y_A_1021q2y   A104114LNAQTQAVPFYEEEEGGGHHHHbxbxaaaaaaa
1q8i_A_411q8i   A4353AFIPADQVPRAEEEEGGGHHHHbbbpaaaaaaa
1qor_A_3011qor   A301310.KYPLKDAQRA.EEEGGGHHHH.bbxaaaaaaa
1qtm_A_7861qtm   A789799LEAPKERAEAVEEEETTTHHHHbbbwaaaaaaa
1qwg_A_2251qwg   A226236ANIAFDEVISLEEEEGGGHHHHblxpaaaaaaa
1r6t_A_3041r6t   A307317IPCAIDQDPYFEEEEGGGHHHHbxbxaaaaaaa
1r9f_A_1191r9f   A123133VSGGSRTLQHLEEEEGGGHHHHbbexaaaaaaa
1rjw_A_3081rjw   A309319EVQPLEKINEVEEEEGGGHHHHbxbxaaaaaaa
1su8_A_5201su8   A522532HMGSCVDNSRAEEESSTTHHHHxaexaaaaaaa
1ufk_A_2071ufk   A217227TGILKDRAPLVEEEEGGGHHHHbvxxaaaaaaa
1ujn_A_311ujn   A3343LLFDRRVEGFAEEEEGGGHHHHbbbxaaaaaaa
1ukf_A_2311ukf   A233243FQSSRSAAPQLEEEETTTHHHHbbbxaaaaaaa
1uku_A_441uku   A5565LKTREDLWEELEEE-GGGHHHHbbbxaaaaaaa
1vj0_A_3401vj0   A340350HRLPLKEANKAEEEEGGGHHHHbbbxaaaaaaa
1wdn_A_431wdn   A4656KPMDFSGIIPAEEE-GGGHHHHbxbxaaaaaaa
2pii_*_562pii   -6373IVVPDDIVDTCEEE-GGGHHHHbbbxaaaaaaa
2shp_A_2212shp   A221229..INAAEIESR..EEGGGHHHH..bxaaaaaaa
3thi_A_603thi   A6171FVLDSIFLSHFEEEEGGGHHHHbbbxaaaaaaa
8abp_*_2878abp   -287297VLITRDNFKEEEEEETTTHHHHbxbbaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1amf_*_41amf   *     MOOMOLYBDATE ION A - 10
1amf_*_41amf   *     MOOMOLYBDATE ION A - 11
1amf_*_41amf   *     MOOMOLYBDATE ION S - 12
1amf_*_41amf   *     MOOMOLYBDATE ION L - 13
1atg_*_31atg   *     EDO1,2-ETHANEDIOL V - 6
1atg_*_31atg   *     WO4TUNGSTATE(VI)ION A - 8
1atg_*_31atg   *     WO4TUNGSTATE(VI)ION T - 9
1atg_*_31atg   *     WO4TUNGSTATE(VI)ION N - 10
1atg_*_31atg   *     WO4TUNGSTATE(VI)ION F - 11
1atg_*_31atg   *     EDO1,2-ETHANEDIOL Q - 17
1cjw_A_1551cjw   A     COTCOA-S-ACETYL TRYPTAMINE L - 158
1cjw_A_1551cjw   A     COTCOA-S-ACETYL TRYPTAMINE M - 159
1cjw_A_1551cjw   A     COTCOA-S-ACETYL TRYPTAMINE C - 160
1cjw_A_1551cjw   A     COTCOA-S-ACETYL TRYPTAMINE E - 161
1cjw_A_1551cjw   A     COTCOA-S-ACETYL TRYPTAMINE A - 163
1cjw_A_1551cjw   A     COTCOA-S-ACETYL TRYPTAMINE L - 164
1cjw_A_1551cjw   A     COTCOA-S-ACETYL TRYPTAMINE F - 167
1cjw_A_1551cjw   A     COTCOA-S-ACETYL TRYPTAMINE Y - 168
1e3m_A_701e3m   A     MSESELENOMETHIONINE G - 70
1ewq_A_721ewq   A     MSESELENOMETHIONINE G - 72
1ewq_A_721ewq   A     MSESELENOMETHIONINE E - 83
1ewq_A_721ewq   A     MSESELENOMETHIONINE R - 84
1ewq_A_721ewq   A     MSESELENOMETHIONINE L - 85
1ewq_A_721ewq   A     MSESELENOMETHIONINE L - 86
1f8f_A_3431f8f   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE S - 358
1h2b_A_3311h2b   A     ZNZINC ION D - 332
1h2b_A_3311h2b   A     ZNZINC ION I - 333
1h2b_A_3311h2b   A     ZNZINC ION H - 334
1h2b_A_3311h2b   A     ZNZINC ION R - 345
1h2b_A_3311h2b   A     NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) L - 346
1h3f_A_1901h3f   A     TYBTYROSINAL E - 191
1h3f_A_1901h3f   A     TYBTYROSINAL Q - 197
1h3f_A_1901h3f   A     TYBTYROSINAL N - 200
1het_A_3461het   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 362
1hs6_A_3061hs6   A     BES2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID F - 314
1hs6_A_3061hs6   A     ZNZINC ION N - 317
1hs6_A_3061hs6   A     ZNZINC ION E - 318
1hs6_A_3061hs6   A     BES2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID E - 318
1hs6_A_3061hs6   A     ZNZINC ION T - 321
1hs6_A_3061hs6   A     BES2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID T - 321
1hs6_A_3061hs6   A     BES2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID V - 322
1hs6_A_3061hs6   A     BES2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID E - 325
1hsj_A_591hsj   A     GLCGLUCOSE W - 62
1hsj_A_591hsj   A     GLCGLUCOSE A - 63
1hsj_A_591hsj   A     GLCGLUCOSE D - 65
1hsj_A_591hsj   A     GLCGLUCOSE R - 66
1j1u_A_1661j1u   A     TYRTYROSINE Q - 173
1j1u_A_1661j1u   A     TYRTYROSINE I - 176
1jil_A_1871jil   A     485[2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (3,4,5-TRIHYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YL)- ACETIC ACID Q - 190
1jil_A_1871jil   A     485[2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (3,4,5-TRIHYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YL)- ACETIC ACID V - 191
1jil_A_1871jil   A     485[2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (3,4,5-TRIHYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YL)- ACETIC ACID G - 192
1jil_A_1871jil   A     485[2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (3,4,5-TRIHYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YL)- ACETIC ACID G - 193
1jil_A_1871jil   A     485[2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (3,4,5-TRIHYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YL)- ACETIC ACID S - 194
1jil_A_1871jil   A     485[2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (3,4,5-TRIHYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YL)- ACETIC ACID D - 195
1jil_A_1871jil   A     485[2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (3,4,5-TRIHYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YL)- ACETIC ACID Q - 196
1jil_A_1871jil   A     485[2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (3,4,5-TRIHYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YL)- ACETIC ACID N - 199
1kfs_A_8831kfs   A     ZNZINC ION H - 901
1kfs_A_8831kfs   A     ZNZINC ION E - 905
1kfs_A_8831kfs   A     ZNZINC ION N - 906
1kqr_A_2051kqr   A     GOLGLYCEROL R - 210
1kqr_A_2051kqr   A     GOLGLYCEROL E - 213
1ne2_A_1391ne2   A     MSESELENOMETHIONINE I - 139
1ne2_A_1391ne2   A     MSESELENOMETHIONINE Y - 140
1ne2_A_1391ne2   A     MSESELENOMETHIONINE S - 141
1ne2_A_1391ne2   A     MSESELENOMETHIONINE I - 142
1ne2_A_1391ne2   A     MSESELENOMETHIONINE G - 143
1ne2_A_1391ne2   A     MSESELENOMETHIONINE L - 151
1ne2_A_1391ne2   A     MSESELENOMETHIONINE F - 155
1nnj_A_1131nnj   A     CRYPROPANE-1,2,3-TRIOL T - 113
1nnj_A_1131nnj   A     CRYPROPANE-1,2,3-TRIOL E - 115
1nnj_A_1131nnj   A     CRYPROPANE-1,2,3-TRIOL Y - 125
1nnj_A_1131nnj   A     CRYPROPANE-1,2,3-TRIOL K - 129
1o98_A_3281o98   A     2PG2-PHOSPHOGLYCERIC ACID E - 335
1o98_A_3281o98   A     MNMANGANESE (II) ION K - 336
1o98_A_3281o98   A     2PG2-PHOSPHOGLYCERIC ACID K - 336
1o98_A_3281o98   A     2PG2-PHOSPHOGLYCERIC ACID H - 339
1pfv_A_2881pfv   A     2FMS-(DIFLUOROMETHYL)HOMOCYSTEINE I - 293
1pfv_A_2881pfv   A     2FMS-(DIFLUOROMETHYL)HOMOCYSTEINE I - 297
1pfv_A_2881pfv   A     2FMS-(DIFLUOROMETHYL)HOMOCYSTEINE F - 300
1pfv_A_2881pfv   A     2FMS-(DIFLUOROMETHYL)HOMOCYSTEINE H - 301
1qor_A_3011qor   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE L - 314
1qor_A_3011qor   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE E - 315
1qtm_A_7861qtm   A     2DT3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE E - 786
1qtm_A_7861qtm   A     MGMAGNESIUM ION E - 786
1r6t_A_3041r6t   A     MSESELENOMETHIONINE L - 306
1r6t_A_3041r6t   A     TYMTRYPTOPHANYL-5'AMP I - 307
1r6t_A_3041r6t   A     TYMTRYPTOPHANYL-5'AMP P - 308
1r6t_A_3041r6t   A     TYMTRYPTOPHANYL-5'AMP C - 309
1r6t_A_3041r6t   A     TYMTRYPTOPHANYL-5'AMP A - 310
1r6t_A_3041r6t   A     TYMTRYPTOPHANYL-5'AMP I - 311
1r6t_A_3041r6t   A     TYMTRYPTOPHANYL-5'AMP D - 312
1r6t_A_3041r6t   A     TYMTRYPTOPHANYL-5'AMP Q - 313
1r6t_A_3041r6t   A     MSESELENOMETHIONINE D - 314
1r6t_A_3041r6t   A     MSESELENOMETHIONINE P - 315
1r6t_A_3041r6t   A     MSESELENOMETHIONINE Y - 316
1r6t_A_3041r6t   A     TYMTRYPTOPHANYL-5'AMP Y - 316
1r6t_A_3041r6t   A     MSESELENOMETHIONINE F - 317
1r6t_A_3041r6t   A     TYMTRYPTOPHANYL-5'AMP F - 317
1r9f_A_1191r9f   A     MSESELENOMETHIONINE V - 119
1r9f_A_1191r9f   A     MSESELENOMETHIONINE S - 120
1r9f_A_1191r9f   A     MSESELENOMETHIONINE I - 121
1r9f_A_1191r9f   A     MSESELENOMETHIONINE V - 123
1r9f_A_1191r9f   A     MSESELENOMETHIONINE Q - 131
1r9f_A_1191r9f   A     MSESELENOMETHIONINE H - 132
1r9f_A_1191r9f   A     MSESELENOMETHIONINE L - 133
1r9f_A_1191r9f   A     MSESELENOMETHIONINE C - 134
1su8_A_5201su8   A     NFSFE(4)-NI(1)-S(5) CLUSTER S - 525
1su8_A_5201su8   A     NFSFE(4)-NI(1)-S(5) CLUSTER C - 526
1su8_A_5201su8   A     NFSFE(4)-NI(1)-S(5) CLUSTER V - 527
1uku_A_441uku   A     CUCOPPER (II) ION D - 48
1uku_A_441uku   A     CUCOPPER (II) ION K - 49
1uku_A_441uku   A     CUCOPPER (II) ION E - 50
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1amf_*_41amf   * MO4MOLYBDATE BINDING SITE.S - 12
1atg_*_31atg   * MOBANION-BINDING POCKET LOCATED AT THE INTERFACE BETWEEN THE 2 DOMAINS OF THE PROTEIN. BINDS BOTH MOLYBDATE AND TUNGSTATE.T - 9
1atg_*_31atg   * MOBANION-BINDING POCKET LOCATED AT THE INTERFACE BETWEEN THE 2 DOMAINS OF THE PROTEIN. BINDS BOTH MOLYBDATE AND TUNGSTATE.N - 10
1h2b_A_3311h2b   A ZN2ZN BINDING SITE FOR CHAIN A, ADDITIONAL SITED - 332
1h2b_A_3311h2b   A ZN2ZN BINDING SITE FOR CHAIN A, ADDITIONAL SITEH - 334
1h3f_A_1901h3f   A AC6TYB BINDING SITE FOR CHAIN AE - 191
1h3f_A_1901h3f   A AC6TYB BINDING SITE FOR CHAIN AQ - 197
1h3f_A_1901h3f   A AC6TYB BINDING SITE FOR CHAIN AN - 200
1o98_A_3281o98   A AC32PG BINDING SITE FOR CHAIN AK - 336
1o98_A_3281o98   A AC7SO4 BINDING SITE FOR CHAIN AY - 337

Clusters included in this Subclass
CLUSTER: EH.2.18
CLUSTER: EH.2.29
CLUSTER: EH.2.58
CLUSTER: EH.3.274
CLUSTER: EH.3.53
CLUSTER: EH.3.6
CLUSTER: EH.4.197
CLUSTER: EH.4.2
CLUSTER: EH.4.62
CLUSTER: EH.4.94
CLUSTER: EH.5.189