Logo
Information on SUBCLASS 2.1.3
Subclass Accession number: 1043
Subclass: 2.1.3 PSSM
Type: EH beta-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 46

Average sequence ID (%) : 9.0 +/- 12.0
Average RMSD (Å) : 0.609 +/- 0.181

Consensus geometry
d (Å): 11 delta (°): 0-45 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: XXXpXX
(φψ)-conformation: bbabaa
Pattern: xxxxx[degknqst]x[adegkqrst]x[afgilmvy]x
Conservation:-1.0000.148-0.251-0.931-0.5551.950-1.5730.942-0.2540.695-0.171
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a26_*_8951a26   -895905IYFADMVSKSAEEEBSSHHHHHbxbbabaaaaa
1aiu_*_31aiu   -312.KQIESKTAFQ.EE--SHHHHH.xxxabaaaaa
1amf_*_541amf   -5464LFISADQKWMDEEE-SSHHHHHbbbbabaaaaa
1b6r_A_3141b6r   A319329NLTDSDTSRLTEEE-S-HHHHHbbbbaxaaaaa
1bif_*_2971bif   -298308VFTSQMKRTIQEEE-SSHHHHHbbbxaxaaaaa
1cfr_*_2651cfr   -266276IFKINSVLDVDEEE-SSHHHHHbbxbabaaaaa
1d2e_A_1211d2e   A124134HTDCPGHADYVEEE-SSHHHHHbbbbabaaaaa
1dlj_A_3621dlj   A362371.VLVNDLENFK.EE---HHHHH.bxbaxaaaaa
1e58_A_531e58   A5464AYTSVLKRAIHEEE-SSHHHHHbbbxabaaaaa
1f0k_A_81f0k   A1121VMAGGTGGHVFEE--SSHHHHHbbbxabaaaaa
1gnl_A_4791gnl   A482492NIAWYEQKAVIEEE--SHHHHHbxbbabaaaaa
1gx3_A_2331gx3   A236246HIRFDSAAQVLEEE-SSHHHHHbbbxabaaaaa
1h05_A_461h05   A4959VRQSDSEAQLLEEE-S-HHHHHbbbbaxaaaaa
1h2e_A_511h2e   A5262IYTSTSGRALEEEE-SSHHHHHbbbxaxaaaaa
1h4r_A_2831h4r   A284294KFNSSKLRVNKEEE---HHHHHbbbbaxaaaaa
1ile_*_4681ile   -468477.EAIGSFQELK.EE--SHHHHH.bbxabaaaaa
1itx_A_2471itx   A250260IASGASATYAAEEE--SHHHHHbbbxaxaaaaa
1jr7_A_2481jr7   A248257.VQPKDFEEGV.EE--SHHHHH.xbpabaaaaa
1jyk_A_2141jyk   A214224IYEIDSVQDYREEE--SHHHHHbbxbabaaaaa
1k87_A_4801k87   A483493QFATHNAHTLAEEE---HHHHHbxxbaxaaaaa
1kek_A_1391kek   A140150MLASSSVQEAHEEE--SHHHHHbbxbabaaaaa
1kfw_A_2371kfw   A240250AFLPANPADIDEEE-SSHHHHHbxxxaxaaaaa
1khb_A_4441khb   A444454VYEALSWQHGVEEE-SSHHHHHbbbxabaaaaa
1knv_A_2731knv   A274284IFSLTSFEDIDEEE--BHHHHHbbbxabaaaaa
1lc5_A_2261lc5   A227237YLVNSDDAAMAEEE---HHHHHbbbbaxaaaaa
1lfp_A_2071lfp   A207216.VQINDEETAQ.EE---HHHHH.bxbaxaaaaa
1mai_*_1081mai   -109119DLIAPSPADAQEEE-SSHHHHHbbbxabaaaaa
1n0w_A_1921n0w   A192201.ARAFNTDHQT.EE--SHHHHH.bbxabaaaaa
1n62_C_71n62   C818YHRPKSIADAVEE--SSHHHHHbbbxabaaaaa
1nfp_*_711nfp   -7383HVLATSPETVVEEE--SHHHHHbbxxabaaaaa
1nrw_A_1691nrw   A173183LGFSFFKEKLEEEE-S-HHHHHbbbbaxaaaaa
1nxu_A_2051nxu   A205213..LTKEPGVIE..EE--HHHHH..xbaxaaaaa
1oey_J_2941oey   J294304LVRLLSDEDVAEEE--SHHHHHxbxxabaaaaa
1ohe_A_1171ohe   A120130HFTGSDQRKQAEEE-S-HHHHHxbbxaxaaaaa
1omw_A_6291omw   A631641VLQCDSDPELVEEE-SSHHHHHbbbbabaaaaa
1q0s_A_461q0s   A4757LANDIQEPIIEEEE-S-HHHHHbxbbaxaaaaa
1qb0_A_4411qb0   A441450.VNLPLERDAE.EE--SHHHHH.bxbaxaaaaa
1qgo_A_371qgo   A3949FRAFTSGMIIREEEE--HHHHHbbbbaxaaaaa
1qhl_A_1641qhl   A165175FKQFNSITDYHEEE-S-HHHHHbbbbabaaaaa
1roc_A_1041roc   A114124NNEYDEEELREEEEESSHHHHHbxbxabaaaaa
1sdo_A_741sdo   A8090YYVTADPKLIREEE-S-HHHHHbbxbaxaaaaa
1su4_A_3311su4   A331340.AIVRSLPSVE.EE---THHHH.bxbaxaaaaa
1uc7_A_111uc7   A1120.TQIKTVDELN.EE--SHHHHH.xxbabaaaaa
2trc_P_1142trc   P114124VYELETGEQFLEEE--SHHHHHxbxxabaaaaa
2viu_A_1762viu   A182192IHHPSTNQEQTEEE-SSHHHHHbxbxabaaaaa
8abp_*_338abp   -3747KIAVPDGEKTLEEE--SHHHHHxbxbabaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a26_*_8951a26   *     CNACARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE Y - 896
1a26_*_8951a26   *     CNACARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE K - 903
1amf_*_541amf   *     MOOMOLYBDATE ION S - 57
1amf_*_541amf   *     MOOMOLYBDATE ION A - 58
1amf_*_541amf   *     MOOMOLYBDATE ION D - 59
1bif_*_2971bif   *     GOLGLYCEROL F - 299
1bif_*_2971bif   *     PO4PHOSPHATE ION M - 303
1bif_*_2971bif   *     PO4PHOSPHATE ION R - 305
1d2e_A_1211d2e   A     MO4MAGNESIUM ION, 4 WATERS COORDINATED D - 126
1d2e_A_1211d2e   A     GDPGUANOSINE-5'-DIPHOSPHATE D - 126
1d2e_A_1211d2e   A     MO4MAGNESIUM ION, 4 WATERS COORDINATED C - 127
1d2e_A_1211d2e   A     GDPGUANOSINE-5'-DIPHOSPHATE C - 127
1d2e_A_1211d2e   A     MO4MAGNESIUM ION, 4 WATERS COORDINATED P - 128
1d2e_A_1211d2e   A     GDPGUANOSINE-5'-DIPHOSPHATE P - 128
1d2e_A_1211d2e   A     MO4MAGNESIUM ION, 4 WATERS COORDINATED G - 129
1d2e_A_1211d2e   A     MO4MAGNESIUM ION, 4 WATERS COORDINATED Y - 133
1e58_A_531e58   A     PHSPHOSPHONO GROUP R - 61
1gnl_A_4791gnl   A     FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER W - 485
1gnl_A_4791gnl   A     FS4IRON/SULFUR CLUSTER Y - 486
1gnl_A_4791gnl   A     FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER Y - 486
1gnl_A_4791gnl   A     FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER E - 487
1gnl_A_4791gnl   A     FS4IRON/SULFUR CLUSTER Q - 488
1gnl_A_4791gnl   A     FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER Q - 488
1gnl_A_4791gnl   A     FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER K - 489
1gnl_A_4791gnl   A     FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER A - 490
1gnl_A_4791gnl   A     FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER V - 491
1h2e_A_511h2e   A     PO4PHOSPHATE ION R - 59
1h2e_A_511h2e   A     EDO1,2-ETHANEDIOL R - 59
1itx_A_2471itx   A     GOLGLYCEROL A - 251
1itx_A_2471itx   A     GOLGLYCEROL S - 252
1itx_A_2471itx   A     GOLGLYCEROL G - 253
1itx_A_2471itx   A     GOLGLYCEROL A - 254
1itx_A_2471itx   A     GOLGLYCEROL S - 255
1jyk_A_2141jyk   A     MSESELENOMETHIONINE I - 214
1k87_A_4801k87   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 485
1k87_A_4801k87   A     FADFLAVIN-ADENINE DINUCLEOTIDE T - 486
1k87_A_4801k87   A     FADFLAVIN-ADENINE DINUCLEOTIDE H - 487
1k87_A_4801k87   A     FADFLAVIN-ADENINE DINUCLEOTIDE N - 488
1k87_A_4801k87   A     FADFLAVIN-ADENINE DINUCLEOTIDE T - 491
1k87_A_4801k87   A     1PEPENTAETHYLENE GLYCOL Q - 497
1k87_A_4801k87   A     1PEPENTAETHYLENE GLYCOL L - 498
1kfw_A_2371kfw   A     GOLGLYCEROL F - 241
1kfw_A_2371kfw   A     GOLGLYCEROL D - 248
1khb_A_4441khb   A     EDO1,2-ETHANEDIOL E - 446
1khb_A_4441khb   A     EDO1,2-ETHANEDIOL A - 447
1khb_A_4441khb   A     EDO1,2-ETHANEDIOL L - 448
1khb_A_4441khb   A     EDO1,2-ETHANEDIOL S - 449
1khb_A_4441khb   A     EDO1,2-ETHANEDIOL W - 450
1khb_A_4441khb   A     EDO1,2-ETHANEDIOL Q - 451
1khb_A_4441khb   A     EDO1,2-ETHANEDIOL G - 453
1lc5_A_2261lc5   A     PIHYDROGENPHOSPHATE ION G - 226
1mai_*_1081mai   *     I3PD-MYO-INOSITOL-1,4,5-TRIPHOSPHATE L - 108
1n0w_A_1921n0w   A     EDO1,2-ETHANEDIOL R - 193
1n0w_A_1921n0w   A     MSESELENOMETHIONINE T - 201
1n0w_A_1921n0w   A     MSESELENOMETHIONINE L - 203
1n0w_A_1921n0w   A     MSESELENOMETHIONINE L - 204
1n0w_A_1921n0w   A     MSESELENOMETHIONINE Y - 205
1n0w_A_1921n0w   A     MSESELENOMETHIONINE Q - 206
1n0w_A_1921n0w   A     MSESELENOMETHIONINE A - 207
1n0w_A_1921n0w   A     MSESELENOMETHIONINE S - 208
1nfp_*_711nfp   *     MYRMYRISTIC ACID I - 72
1nfp_*_711nfp   *     FMNFLAVIN MONONUCLEOTIDE V - 74
1nfp_*_711nfp   *     FMNFLAVIN MONONUCLEOTIDE T - 77
1nfp_*_711nfp   *     FMNFLAVIN MONONUCLEOTIDE S - 78
1nfp_*_711nfp   *     FMNFLAVIN MONONUCLEOTIDE P - 79
1nfp_*_711nfp   *     FMNFLAVIN MONONUCLEOTIDE E - 80
1nfp_*_711nfp   *     FMNFLAVIN MONONUCLEOTIDE T - 81
1nfp_*_711nfp   *     FMNFLAVIN MONONUCLEOTIDE K - 84
1nfp_*_711nfp   *     MYRMYRISTIC ACID K - 84
1nfp_*_711nfp   *     FMNFLAVIN MONONUCLEOTIDE A - 85
1nfp_*_711nfp   *     MYRMYRISTIC ACID K - 87
1oey_J_2941oey   J     MSESELENOMETHIONINE L - 297
1oey_J_2941oey   J     MSESELENOMETHIONINE E - 301
1oey_J_2941oey   J     MSESELENOMETHIONINE D - 302
1oey_J_2941oey   J     MSESELENOMETHIONINE V - 303
1oey_J_2941oey   J     MSESELENOMETHIONINE A - 304
1q0s_A_461q0s   A     SAHS-ADENOSYL-L-HOMOCYSTEINE N - 49
1q0s_A_461q0s   A     SAHS-ADENOSYL-L-HOMOCYSTEINE D - 50
1q0s_A_461q0s   A     SAHS-ADENOSYL-L-HOMOCYSTEINE I - 51
1q0s_A_461q0s   A     SAHS-ADENOSYL-L-HOMOCYSTEINE Q - 52
1q0s_A_461q0s   A     SAHS-ADENOSYL-L-HOMOCYSTEINE I - 55
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gnl_A_4791gnl   A FOAFSO BINDING SITE FOR CHAIN AE - 487
1h05_A_461h05   A SO3SO4 BINDING SITE FOR CHAIN AR - 50
1h05_A_461h05   A SO2SO4 BINDING SITE FOR CHAIN AS - 54
1h05_A_461h05   A SO3SO4 BINDING SITE FOR CHAIN AW - 61
1h05_A_461h05   A SO3SO4 BINDING SITE FOR CHAIN AQ - 64
1h2e_A_511h2e   A PO4PO4 BINDING SITE FOR CHAIN AR - 59

Clusters included in this Subclass
CLUSTER: EH.2.15
CLUSTER: EH.3.21
CLUSTER: EH.3.43
CLUSTER: EH.4.5