ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 2.1.7

Subclass Accession number: 1047
Subclass: 2.1.7

Type: EH beta-alpha
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Number of loops: 26

Average sequence ID (%) : 10.6 +/- 14.0
Average RMSD (Å) : 0.685 +/- 0.189

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	XXXpXX
(φψ)-conformation:	bbabaa

Pattern:	[acfgilvwy]	[fgilvwy]	x	[acgnstv]	x	[DEHKNRSTY]	x	x	x	x
Conservation:	0.282	-0.287	-0.060	0.888	-0.897	2.286	-1.020	-0.154	-0.973	-0.065

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1atg_*_52	1atg	-	52	61	VFFSADEKSP	EEE-SSSHHH	bbbxabaaaa
1b0u_A_206	1b0u	A	207	216	VVVTHEMGFA	EEE-S-HHHH	bbxbaxaaaa
1bn8_A_32	1bn8	A	32	41	VYTVSNRNQL	EEEE-SHHHH	bbbbabaaaa
1c4q_A_127	1c4q	A	128	137	ELATNRANLQ	EEEE--TTHH	xbbbaxaaaa
1ewq_A_690	1ewq	A	692	701	LFATHYFELT	EEE---HHHH	bbxbaxaaaa
1f9a_A_94	1f9a	A	94	103	IVYSGNPLVR	EEE---HHHH	bbxbaxaaaa
1gky_*_164	1gky	-	165	174	VIVNDDLDKA	EEE-SSHHHH	bbxxabaaaa
1gmu_A_71	1gmu	A	76	85	VVRCDDPFML	EEE-S-HHHH	bbxbabaaaa
1hl2_A_161	1hl2	A	165	174	KQTSGDLYQM	EE----HHHH	xxxbaxaaaa
1jj7_A_695	1jj7	A	697	706	LLITQHLSLV	EEE-S-HHHH	bbbbaxaaaa
1li4_A_238	1li4	A	240	249	IITEIDPINA	EEE-S-HHHH	bbbbaxaaaa
1lj8_A_59	1lj8	A	61	70	CGVGLRSEDR	EEEB-STTHH	bxbbabaaaa
1luc_B_170	1luc	B	171	180	FVNATSKEVV	EEE--SHHHH	bbxxabaaaa
1m3u_A_19	1m3u	A	21	30	TITAYDYSFA	EEE--SHHHH	bbxbabaaaa
1mve_A_135	1mve	A	140	149	LWSSESAAWV	EEEBS-HHHH	bbbxaxaaaa
1n6m_A_520	1n6m	A	520	528	.ETVLDPNHL	.EE--SHHHH	.xxpabaaaa
1o4w_A_101	1o4w	A	101	110	ILITNDKELK	EEE---HHHH	xbbbaxaaaa
1oey_J_294	1oey	J	294	303	LVRLLSDEDV	EEE--SHHHH	xbxxabaaaa
1qhl_A_164	1qhl	A	165	174	FKQFNSITDY	EEE-S-HHHH	bbbbabaaaa
1r0w_A_599	1r0w	A	601	610	ILVTSKMEHL	EEE-S-HHHH	bbxbabaaaa
1sdo_A_74	1sdo	A	80	89	YYVTADPKLI	EEE-S-HHHH	bbxbaxaaaa
1set_A_220	1set	A	220	229	LYLTGTAEVV	EEE-SSTHHH	bbxxabaaaa
1upa_A_529	1upa	A	530	539	ATRATNREEL	EEE--SHHHH	bbbbabaaaa
1uzb_A_446	1uzb	A	448	457	GVYSRKREHL	EEE-S-HHHH	bbbbaxaaaa
7req_A_284	7req	A	288	297	WGIGMNFFME	EEE-S-HHHH	bxbxaxaaaa
7req_B_280	7req	B	284	293	VTATHDQFLT	EEE-S-HHHH	bxbbaxaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1atg_*_52	1atg	*	WO4TUNGSTATE(VI)ION	S - 55
1atg_*_52	1atg	*	WO4TUNGSTATE(VI)ION	A - 56
1b0u_A_206	1b0u	A	ATPADENOSINE-5'-TRIPHOSPHATE	V - 209
1b0u_A_206	1b0u	A	ATPADENOSINE-5'-TRIPHOSPHATE	H - 211
1c4q_A_127	1c4q	A	GALD-GALACTOSE	A - 130
1c4q_A_127	1c4q	A	GALD-GALACTOSE	T - 131
1c4q_A_127	1c4q	A	GALD-GALACTOSE	N - 132
1c4q_A_127	1c4q	A	GALD-GALACTOSE	R - 133
1ewq_A_690	1ewq	A	MSESELENOMETHIONINE	Y - 690
1ewq_A_690	1ewq	A	MSESELENOMETHIONINE	T - 691
1ewq_A_690	1ewq	A	MSESELENOMETHIONINE	L - 692
1ewq_A_690	1ewq	A	MSESELENOMETHIONINE	E - 699
1f9a_A_94	1f9a	A	ATPADENOSINE-5'-TRIPHOSPHATE	Y - 96
1f9a_A_94	1f9a	A	ATPADENOSINE-5'-TRIPHOSPHATE	S - 97
1f9a_A_94	1f9a	A	ATPADENOSINE-5'-TRIPHOSPHATE	G - 98
1hl2_A_161	1hl2	A	3PY3-HYDROXYPYRUVIC ACID	K - 165
1hl2_A_161	1hl2	A	3PY3-HYDROXYPYRUVIC ACID	T - 167
1jj7_A_695	1jj7	A	MGMAGNESIUM ION	I - 699
1jj7_A_695	1jj7	A	ADPADENOSINE-5'-DIPHOSPHATE	I - 699
1li4_A_238	1li4	A	IPAISOPROPYL ALCOHOL	R - 238
1li4_A_238	1li4	A	NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE	T - 242
1li4_A_238	1li4	A	NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE	E - 243
1li4_A_238	1li4	A	NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE	I - 244
1li4_A_238	1li4	A	NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE	D - 245
1li4_A_238	1li4	A	NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE	N - 248
1lj8_A_59	1lj8	A	MSESELENOMETHIONINE	S - 59
1lj8_A_59	1lj8	A	MSESELENOMETHIONINE	I - 60
1lj8_A_59	1lj8	A	MSESELENOMETHIONINE	C - 61
1lj8_A_59	1lj8	A	MSESELENOMETHIONINE	G - 62
1lj8_A_59	1lj8	A	MSESELENOMETHIONINE	V - 63
1lj8_A_59	1lj8	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	V - 63
1lj8_A_59	1lj8	A	MSESELENOMETHIONINE	G - 64
1lj8_A_59	1lj8	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	L - 65
1lj8_A_59	1lj8	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	R - 66
1lj8_A_59	1lj8	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	E - 68
1lj8_A_59	1lj8	A	MSESELENOMETHIONINE	D - 69
1lj8_A_59	1lj8	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	D - 69
1lj8_A_59	1lj8	A	MSESELENOMETHIONINE	R - 70
1lj8_A_59	1lj8	A	MSESELENOMETHIONINE	A - 72
1lj8_A_59	1lj8	A	MSESELENOMETHIONINE	R - 73
1lj8_A_59	1lj8	A	MSESELENOMETHIONINE	L - 76
1m3u_A_19	1m3u	A	KPLKETOPANTOATE	T - 23
1m3u_A_19	1m3u	A	KPLKETOPANTOATE	Y - 25
1mve_A_135	1mve	A	MSESELENOMETHIONINE	L - 136
1mve_A_135	1mve	A	CACALCIUM ION	L - 136
1mve_A_135	1mve	A	MSESELENOMETHIONINE	R - 137
1mve_A_135	1mve	A	CACALCIUM ION	R - 137
1mve_A_135	1mve	A	MSESELENOMETHIONINE	F - 138
1mve_A_135	1mve	A	CACALCIUM ION	F - 138
1mve_A_135	1mve	A	MSESELENOMETHIONINE	N - 139
1mve_A_135	1mve	A	CACALCIUM ION	N - 139
1oey_J_294	1oey	J	MSESELENOMETHIONINE	L - 297
1oey_J_294	1oey	J	MSESELENOMETHIONINE	E - 301
1oey_J_294	1oey	J	MSESELENOMETHIONINE	D - 302
1oey_J_294	1oey	J	MSESELENOMETHIONINE	V - 303
1oey_J_294	1oey	J	MSESELENOMETHIONINE	A - 304
1set_A_220	1set	A	SSA5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE	G - 224
1set_A_220	1set	A	SSA5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE	T - 225
1set_A_220	1set	A	SSA5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE	A - 226
1set_A_220	1set	A	SSA5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE	E - 227
1upa_A_529	1upa	A	MSESELENOMETHIONINE	A - 533
1upa_A_529	1upa	A	MSESELENOMETHIONINE	T - 534
1upa_A_529	1upa	A	MSESELENOMETHIONINE	N - 535
1upa_A_529	1upa	A	MSESELENOMETHIONINE	R - 536
1upa_A_529	1upa	A	MSESELENOMETHIONINE	L - 539
1upa_A_529	1upa	A	MSESELENOMETHIONINE	L - 540
1upa_A_529	1upa	A	MSESELENOMETHIONINE	L - 543
7req_A_284	7req	A	2CP2-CARBOXYPROPYL-COENZYME A	S - 285
7req_A_284	7req	A	2CP2-CARBOXYPROPYL-COENZYME A	F - 286
7req_A_284	7req	A	2CP2-CARBOXYPROPYL-COENZYME A	F - 287
7req_B_280	7req	B	GOLGLYCEROL	R - 301

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1hl2_A_161	1hl2	A	CATCATALYTIC LYSINE FORMING SCHIFF BASE	K - 165
1hl2_A_161	1hl2	A	AC13PY BINDING SITE FOR CHAIN A	T - 167

Clusters included in this Subclass