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Information on SUBCLASS 2.1.8
Subclass Accession number: 1048
Subclass: 2.1.8 PSSM
Type: EH beta-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 22

Average sequence ID (%) : 9.1 +/- 11.3
Average RMSD (Å) : 0.695 +/- 0.196

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXXpXX
(φψ)-conformation: bbabaa
Pattern: x[acfgilvy]xxx[adegnrst]x[adegkqrs]xx[adegnpt]x[afgilvy]x
Conservation:2.6180.438-0.395-0.607-0.9701.540-1.159-0.315-0.709-0.1910.125-0.3030.069-0.141
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1c7q_A_2621c7q   A264277LLVNYEPSLHYVSEEEEESSGGGHHHHHxxbbabaaaaaaaa
1coz_A_671coz   A6881VIPEKNWEQKKQDIEEEE--STTHHHHHbbxbabaaaaaaaa
1dkr_A_1681dkr   A169182VIVSPDHGGVTRAREEEESSTT-HHHHHbxbxabaaaaaaaa
1gyt_A_1561gyt   A158171VFNVPTRRELTSGEEEE-SSGGGHHHHHbxxbabaaaaaaaa
1id1_A_1031id1   A104117VLAVSDSKNLNKIKEEE-SSGGGHHHHHbbbbabaaaaaaaa
1ijb_A_6751ijb   A675687.FVLSSVDELEQQR.EEESSGGGHHHHH.bbbabaaaaaaaa
1izc_A_2501izc   A251264FGGALSVDMVPSLIEEE-SSGGGHHHHHbbbbabaaaaaaaa
1jwq_A_921jwq   A93106ETYYQRSASKAFANEEEE-SGGGHHHHHbbbbabaaaaaaaa
1l7d_A_1971l7d   A199212MATDVRAATKEQVEEEE-S-STTHHHHHbbbbaxaaaaaaaa
1lss_A_941lss   A95108IARISEIEYKDVFEEEE-SSTTHHHHHHbbxbaxaaaaaaaa
1n57_A_2571n57   A257270LLTGDSPFAANALGEEEESSGGGHHHHHxbbbabaaaaaaaa
1nqu_A_481nqu   A5063LVRVPGSWEIPVAAEEEESSGGGHHHHHbbbbabaaaaaaaa
1nw6_A_2661nw6   A268281ICTDAAPVFKEYYQEEEESSTTHHHHHHbbbbaxaaaaaaaa
1o1z_A_931o1z   A95108NIEIKEREAADAVLEEEE--GGGHHHHHxxxxabaaaaaaaa
1o89_A_1741o89   A175188VAVSGRESTHEYLKEEEES-GGGHHHHHbxbbaxaaaaaaaa
1qsg_A_341qsg   A3649AFTYQNDKLKGRVEEEEESSTTTHHHHHbbbbabaaaaaaaa
1qtw_A_2571qtw   A259272ILETINPDIWAEEIEE--S-GGGHHHHHbxaxabaaaaaaaa
1qyi_A_3611qyi   A361373.YVINHLGELRGVL.EEESSGGGHHHHH.bbbabaaaaaaaa
1rql_A_2441rql   A244256.FTIETMQELESVM.EEESSGGGHHHHH.bbbabaaaaaaaa
1ufk_A_1441ufk   A146159LGVDIDPMVLPQAEEEEES-GGGHHHHHbbbbabaaaaaaaa
1uuf_A_2001uuf   A202215VAFTTSEAKREAAKEEEESSGGGHHHHHbxbbabaaaaaaaa
1v7z_A_1131v7z   A115128VLMNGHYENSMFIVEEEE-SGGGHHHHHbxbxabaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1lss_A_941lss   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE R - 97
1lss_A_941lss   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE S - 99
1lss_A_941lss   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE E - 100
1n57_A_2571n57   A     MSESELENOMETHIONINE L - 257
1n57_A_2571n57   A     MSESELENOMETHIONINE L - 258
1n57_A_2571n57   A     MSESELENOMETHIONINE L - 272
1n57_A_2571n57   A     MSESELENOMETHIONINE A - 273
1n57_A_2571n57   A     MSESELENOMETHIONINE A - 274
1n57_A_2571n57   A     MSESELENOMETHIONINE Q - 275
1nqu_A_481nqu   A     RDL6,7-DIOXO-5H-8-RIBITYLAMINOLUMAZINE P - 54
1nqu_A_481nqu   A     RDL6,7-DIOXO-5H-8-RIBITYLAMINOLUMAZINE G - 55
1nqu_A_481nqu   A     RDL6,7-DIOXO-5H-8-RIBITYLAMINOLUMAZINE S - 56
1nqu_A_481nqu   A     RDL6,7-DIOXO-5H-8-RIBITYLAMINOLUMAZINE W - 57
1nqu_A_481nqu   A     RDL6,7-DIOXO-5H-8-RIBITYLAMINOLUMAZINE E - 58
1nw6_A_2661nw6   A     SFGADENOSYL-ORNITHINE T - 270
1nw6_A_2661nw6   A     SFGADENOSYL-ORNITHINE D - 271
1nw6_A_2661nw6   A     SFGADENOSYL-ORNITHINE A - 272
1nw6_A_2661nw6   A     SFGADENOSYL-ORNITHINE A - 273
1qsg_A_341qsg   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE Y - 39
1qsg_A_341qsg   A     GLCGLUCOSE Q - 40
1qsg_A_341qsg   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE Q - 40
1qsg_A_341qsg   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 44
1qtw_A_2571qtw   A     ZNZINC ION E - 261
1v7z_A_1131v7z   A     MNMANGANESE (II) ION G - 119
1v7z_A_1131v7z   A     ZNZINC ION G - 119
1v7z_A_1131v7z   A     CRNN-[(E)-AMINO(IMINO)METHYL]-N-METHYLGLYCINE G - 119
1v7z_A_1131v7z   A     MNMANGANESE (II) ION H - 120
1v7z_A_1131v7z   A     ZNZINC ION H - 120
1v7z_A_1131v7z   A     CRNN-[(E)-AMINO(IMINO)METHYL]-N-METHYLGLYCINE H - 120
1v7z_A_1131v7z   A     MNMANGANESE (II) ION Y - 121
1v7z_A_1131v7z   A     CRNN-[(E)-AMINO(IMINO)METHYL]-N-METHYLGLYCINE Y - 121
1v7z_A_1131v7z   A     MNMANGANESE (II) ION E - 122
1v7z_A_1131v7z   A     CRNN-[(E)-AMINO(IMINO)METHYL]-N-METHYLGLYCINE E - 122

Clusters included in this Subclass
CLUSTER: EH.4.38
CLUSTER: EH.5.21
CLUSTER: EH.5.39
CLUSTER: EH.6.34
CLUSTER: EH.6.6