Information on SUBCLASS 2.3.2 |
Subclass Accession number: 108
Subclass: 2.3.2 Type: HE alpha-beta DB: ArchDB-KI |
Number of loops: 7 Average sequence ID (%) : 30.3 +/- 5.2 Average RMSD (Å) : 0.54 +/- 0.36 Consensus geometry
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Consensus Sequence: | ppGhph |
(φψ)-conformation: | aagpbp |
Pattern: | {DEKNT} | [ILV] | {IMV} | [DKNQS] | {KR} | [AFWY] | [AE] | {DEQR} | {KNR} | [G] | [FILVY] | {EKRT} | {ILP} | {LTV} |
Conservation: | -0.680 | 0.776 | -0.285 | -0.263 | 0.053 | 0.211 | 0.253 | -0.383 | -0.350 | 3.089 | -0.086 | -0.703 | -0.928 | -0.705 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1be4_A_21 | 1be4 | A | 23 | 36 | EIIKRFEQKGFRLV | HHHHHHHHHT-EEE | aaaaaaaaagpxxa |
1ehw_B_21 | 1ehw | B | 23 | 36 | DVIQRFERRGFTLV | HHHHHHHHHT-EEE | aaaaaaaaavxbxa |
1hdi_A_265 | 1hdi | A | 267 | 280 | NLMSKAAANGVKIT | HHHHHHHHHT-EEE | aaaaaaaaavxxxb |
1k47_A_306 | 1k47 | A | 311 | 324 | TLKNRWADLGIELL | HHHHHHHHTT-EEE | aaaaaaaaavxxxa |
1nhk_R_20 | 1nhk | R | 22 | 35 | KIISRFEEKGLKPV | HHHHHHHHTT-EEE | aaaaaaaaavxx-a |
1nue_A_21 | 1nue | A | 23 | 36 | EIIKRFEQKGFRLV | HHHHHHHHHT-EEE | aaaaaaaaagxxxa |
1zin_*_181 | 1zin | - | 181 | 194 | PLVDFYEQKGYLRN | HHHHHHHHHT-EEE | aaaaaaaaavaxbx |
Bibliographic annotations |
Loop | PDB | Chain | Annotation | Residue |
1nhk_R_20 | 1nhk RefR.L.WILLIAMS,D.A.OREN,J.MUNOZ-DORADO,S.INOUYE,E.ARNOLD. CRYSTAL STRUCTURE OF MYXOCOCCUS XANTHUS NUCLEOSIDE DIPHOSPHATE KINASE AND ITS INTERACTION WITH A NUCLEOTIDE SUSTRATE AT 2.0 A RESOLUTION J.MOL.BIOL. v.234;1230,1993 | R | SUBSTRATE BINDING RESIDUE | G - 21 |
Clusters included in this Subclass |
CLUSTER: HE.1.5 |
CLUSTER: HE.2.15 |
CLUSTER: HE.3.8 |