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Information on SUBCLASS 2.2.8
Subclass Accession number: 1081
Subclass: 2.2.8 PSSM
Type: EH beta-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0000287 (>75 %)  
Number of loops: 7

Average sequence ID (%) : 9.5 +/- 14.3
Average RMSD (Å) : 0.700 +/- 0.163

Consensus geometry
d (Å): 9 delta (°): 0-45 theta (°): 45-90 rho (°): 180-225
Consensus Sequence: XXhpXX
(φψ)-conformation: bbppaa
Pattern: [fikltv][FHIVY][ILMPV][DGRS]xxx[aflv]x
Conservation:-0.9451.2280.8791.596-0.718-0.634-0.8410.215-0.780
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1n57_A_181n57   A1927FFPSEYSLSEE--HHHHHbxpxaaaaa
1o5z_A_891o5z   A8997EYISEEDVVEE--HHHHHbxpxaaaaa
1p4x_A_2161p4x   A218226IHMDDAQQDEE--HHHHHbbbxaaaaa
1q74_A_1791q74   A183191TVLGLSALIEE-BHHHHHxbxxaaaaa
1q7h_A_561q7h   A5664LIPSVYLLNEE--HHHHHxbxxaaaaa
1r6f_A_2301r6f   A232240KIVSIKDFLEE--HHHHHbbbxaaaaa
1six_A_571six   A6169VHPRSGLATEE--HHHHHxbxxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1n57_A_181n57   A     MSESELENOMETHIONINE F - 19
1n57_A_181n57   A     MSESELENOMETHIONINE F - 20
1n57_A_181n57   A     MSESELENOMETHIONINE P - 21
1n57_A_181n57   A     MSESELENOMETHIONINE S - 22
1n57_A_181n57   A     MSESELENOMETHIONINE S - 25
1q7h_A_561q7h   A     MSESELENOMETHIONINE L - 56
1q7h_A_561q7h   A     MSESELENOMETHIONINE I - 57
1q7h_A_561q7h   A     MSESELENOMETHIONINE P - 58
1q7h_A_561q7h   A     MSESELENOMETHIONINE S - 59
1q7h_A_561q7h   A     MSESELENOMETHIONINE V - 60
1q7h_A_561q7h   A     MSESELENOMETHIONINE Y - 61
1q7h_A_561q7h   A     MSESELENOMETHIONINE L - 62
1q7h_A_561q7h   A     MSESELENOMETHIONINE L - 63
1q7h_A_561q7h   A     MSESELENOMETHIONINE Y - 65
1six_A_571six   A     DUP2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE P - 63
1six_A_571six   A     MGMAGNESIUM ION R - 64
1six_A_571six   A     DUP2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE R - 64
1six_A_571six   A     DUP2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE S - 65
1six_A_571six   A     DUP2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE G - 66
1six_A_571six   A     DUP2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE L - 67
1six_A_571six   A     DUP2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE R - 70

Clusters included in this Subclass
CLUSTER: EH.2.97