ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 3.3.5

Subclass Accession number: 1150
Subclass: 3.3.5

Type: EH beta-alpha
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 2 (>75 %)  4 (>75 %)
GO : GO:0000107 (>50 %)  GO:0016757 (>50 %)  GO:0016763 (>50 %)
SCOP : 52171 (>75 %)  52317 (>75 %)  52318 (>75 %)

Number of loops: 7

Average sequence ID (%) : 9.1 +/- 11.0
Average RMSD (Å) : 1.086 +/- 0.195

Consensus geometry

d (Å): 13

delta (°): 0-45

theta (°): 45-90

rho (°): 225-270

Consensus Sequence:	XXphpXX
(φψ)-conformation:	bbpppaa

Pattern:	[afitv]	x	[ilty]	x	[eksty]	[fpy]	[ADNT]	x	[agkqt]	[aekqs]	[aiklv]	x
Conservation:	0.064	-1.435	-0.283	-0.733	-0.135	1.146	1.658	1.592	-0.403	-0.048	-0.197	-1.226

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bqu_A_199	1bqu	A	200	211	SGITYEDRPSKE	EEEE---HHHHH	bbbxxxbaaaaa
1ekm_A_49	1ekm	A	54	65	VTLREPARKAYI	EEEE---HHHHH	bbxbppxaaaaa
1k47_A_160	1k47	A	160	171	VLYQSFDRQKVA	EEEE---HHHHH	bbbbxbxaaaaa
1n9e_A_93	1n9e	A	98	109	IETLKPNKTEAL	EEEE---HHHHH	bbxxxxxaaaaa
1nnw_A_217	1nnw	A	219	230	FIEVEYDKKIIE	EEEE---SHHHH	xbbbxbxaaaaa
1nqe_A_383	1nqe	A	391	402	TSYKAPNLGQLY	EEEE---HHHHH	bbbbxpxaaaaa
1nqz_A_136	1nqz	A	137	148	AQIITPTLAELR	EEEE--BHHHHH	abbbbxxaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1n9e_A_93	1n9e	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 93
1n9e_A_93	1n9e	A	NAGN-ACETYL-D-GLUCOSAMINE	L - 101
1n9e_A_93	1n9e	A	NAGN-ACETYL-D-GLUCOSAMINE	K - 102
1n9e_A_93	1n9e	A	NAGN-ACETYL-D-GLUCOSAMINE	P - 103
1n9e_A_93	1n9e	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 104
1n9e_A_93	1n9e	A	CACALCIUM ION	K - 105
1n9e_A_93	1n9e	A	NAGN-ACETYL-D-GLUCOSAMINE	E - 107
1nqe_A_383	1nqe	A	C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE	Y - 383
1nqe_A_383	1nqe	A	C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE	F - 385
1nqe_A_383	1nqe	A	C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE	T - 391

Clusters included in this Subclass

CLUSTER: EH.4.77